Detail information of GWHGAAEX011494/evm.TU.scaffold_38.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0446 | 0 | Vacuolar sorting protein VPS1, dynamin, and related proteins |
| nr | gi|672115042|ref|XP_008779526.1| | 0 | PREDICTED: dynamin-2A-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LQ55|DRP2B_ARATH | 0 | Dynamin-2B |
| trEMBL | tr|M0TEZ3|M0TEZ3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P05530_001} |
| TAIR | AT1G59610 | 0 | dynamin-like 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 1881450 | 1911751 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011494
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00350.22 | Dynamin_N | 41 | 205 | 6.60E-32 |
| PF01031.19 | Dynamin_M | 257 | 492 | 5.60E-23 |
| PF00169.28 | PH | 580 | 698 | 1.20E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01528 | DNM1_3 | Phospholipase D signaling pathway | map04072 |
| Endocytosis | map04144 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 | ||
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 200.740 |
| SRR2545915 | Juvenile tuber | 191.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 73.650 |
| SRR5643514 | five period of Gastrodia elata | 67.350 | |
| SRR5643515 | five period of Gastrodia elata | 65.710 | |
| SRR5643524 | five period of Gastrodia elata | 66.570 | |
| SRR5643525 | five period of Gastrodia elata | 58.170 | |
| SRR5643528 | five period of Gastrodia elata | 51.790 | |
| SRR5643658 | five period of Gastrodia elata | 63.270 | |
| SRR5643659 | five period of Gastrodia elata | 97.580 | |
| SRR5643660 | five period of Gastrodia elata | 111.280 | |
| SRR5643661 | five period of Gastrodia elata | 98.280 | |
| SRR5643662 | five period of Gastrodia elata | 126.110 | |
| SRR5643663 | five period of Gastrodia elata | 119.700 | |
| SRR5643664 | five period of Gastrodia elata | 137.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 113.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 62.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 102.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 127.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 123.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 145.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 128.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 112.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 81.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 100.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 82.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 82.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 152.56 |
| Juven | Juvenile tuber | 140.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 76.50 | |
| Mother_Juven | Mother tuber of Juvenile | 136.97 |