Detail information of GWHGAAEX011501/evm.TU.scaffold_38.69


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|57641570|ref|YP_184048.1|4.00E-12exosome complex RNA-binding protein Rrp4 [Thermococcus kodakarensis KOD1]
KOGKOG30132.00E-148Exosomal 3'-5' exoribonuclease complex, subunit Rrp4
nrgi|743780127|ref|XP_010920429.1|0PREDICTED: exosome complex component RRP4 isoform X1 [Elaeis guineensis]
trEMBLtr|M0RMQ9|M0RMQ9_MUSAM2.00E-174Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P30350_001}
TAIRAT1G033602.00E-148ribosomal RNA processing 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004120348502045403-
Transcript Sequence

Network for GWHGAAEX011501

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15985.4KH_61822245.00E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03679RRP4, EXOSC2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms120.980
SRR2545915Juvenile tuber136.090
SRP108465SRR5643513five period of Gastrodia elata61.870
SRR5643514five period of Gastrodia elata51.610
SRR5643515five period of Gastrodia elata51.500
SRR5643524five period of Gastrodia elata44.990
SRR5643525five period of Gastrodia elata33.440
SRR5643528five period of Gastrodia elata32.670
SRR5643658five period of Gastrodia elata33.370
SRR5643659five period of Gastrodia elata69.540
SRR5643660five period of Gastrodia elata75.130
SRR5643661five period of Gastrodia elata66.040
SRR5643662five period of Gastrodia elata68.810
SRR5643663five period of Gastrodia elata70.420
SRR5643664five period of Gastrodia elata75.130
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_168.300
SRR6049655Rhizomagastrodiae_C368-T10_good_137.930
SRR6049656Rhizomagastrodiae_C368-T07_good_166.160
SRR6049657Rhizomagastrodiae_C368-T07_good_177.810
SRR6049658Rhizomagastrodiae_C368-T04_good_194.500
SRR6049659Rhizomagastrodiae_C368-T04_good_193.170
SRR6049660Rhizomagastrodiae_C368-T01_good_172.570
SRR6049661Rhizomagastrodiae_C368-T04_good_177.590
SRR6049662Rhizomagastrodiae_C368-T01_good_151.860
SRR6049663Rhizomagastrodiae_C368-T01_good_169.270
SRR6049664Rhizomagastrodiae_C368-T10_good_158.720
SRR6049665Rhizomagastrodiae_C368-T10_good_158.720
SRP279888GastroGastrodia elata tuber 106.96
JuvenJuvenile tuber73.01
Mother_GastroMother tuber of Gastrodia elata 69.73
Mother_JuvenMother tuber of Juvenile 53.16