Detail information of GWHGAAEX011505/evm.TU.scaffold_38.74_evm.TU.scaffold_38.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0965 | 3.00E-48 | Predicted RNA-binding protein, contains SWAP and G-patch domains |
| nr | gi|743767357|ref|XP_010913939.1| | 1.31E-96 | PREDICTED: protein gamma response 1 [Elaeis guineensis] |
| Swissprot | tr|Q9ZRT1|GR1_ARATH | 1.00E-50 | Protein gamma response 1 |
| trEMBL | tr|M0SIL1|M0SIL1_MUSAM | 6.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P28450_001} |
| TAIR | AT3G52120 | 3.00E-48 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 2078519 | 2080645 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011505
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08573.9 | SAE2 | 425 | 459 | 4.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0004519 | Molecular Function | endonuclease activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.980 |
| SRR2545915 | Juvenile tuber | 56.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.940 |
| SRR5643514 | five period of Gastrodia elata | 1.970 | |
| SRR5643515 | five period of Gastrodia elata | 1.340 | |
| SRR5643524 | five period of Gastrodia elata | 1.960 | |
| SRR5643525 | five period of Gastrodia elata | 0.520 | |
| SRR5643528 | five period of Gastrodia elata | 0.310 | |
| SRR5643658 | five period of Gastrodia elata | 0.620 | |
| SRR5643659 | five period of Gastrodia elata | 0.760 | |
| SRR5643660 | five period of Gastrodia elata | 0.830 | |
| SRR5643661 | five period of Gastrodia elata | 0.420 | |
| SRR5643662 | five period of Gastrodia elata | 0.340 | |
| SRR5643663 | five period of Gastrodia elata | 0.400 | |
| SRR5643664 | five period of Gastrodia elata | 0.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.23 |
| Juven | Juvenile tuber | 1.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.49 | |
| Mother_Juven | Mother tuber of Juvenile | 0.76 |