Gene detail

Detail information of GWHGAAEX011506/evm.TU.scaffold_38.76

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743767355\|ref\|XP_010913938.1\|	5.24E-115	PREDICTED: transcription factor bHLH48-like isoform X3 [Elaeis guineensis]
Swissprot	tr\|Q8VZ02\|BH048_ARATH	4.00E-66	Transcription factor bHLH48
trEMBL	tr\|M0SQ96\|M0SQ96_MUSAM	2.00E-95	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P19330_001}
TAIR	AT3G57800	2.00E-66	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	2087781	2092223	-

Transcript Sequence
>GWHTAAEX011506 CCAGCATTCTAATAAAAAAAGGAGAGTTCATAATAAAAATTTTGAACCAAATATATGATTAAAATCTCTTAGTTATTATTTTGACTAACTCTAATGATCATTAATTGCATATTTGACTAATTTTGAAGAATCTTAACAGGATGTCAGGAATCGTAACAGATTATACGTTCACAAAATGAATTCGCAGCCCAGAAACATATAAAAGACCCATTTCTACGGCTGGCTGACCCGAGCTATTCTTCCATCTTTGTGCATAAATGCTTCACTTTAATCTTACCTCCGGTGAACATACCGGCAGCTCCATCTCTTCTTTCTCGTCGGAACCCTTTTTTTAAGAGATCTCGACGTTGCTTCAGAGCGCGGCCGCTTCCGGTAACAAAAACGCCGGGATTAACGAGGAAAGAGAAAGAGGAAGAGGGGAGATAGAGAGAAGGAGGGGAGCCATTGCAACTCTATTTATATATAACTCACCGTCACTTCTTCCTCTTTTCTTTTTTTTCGCTCTGCTGAGGCGGGGCATCCGGAATCCAGAAATCTAGGTTTTCGCATCTCTTGCTGCCCGGGAATTCGATTCCAATTCGAATCAGAGAAGTAATTTCTGGCTGATTGGGGGATTTTCGTGGATCTGAATCTGTTGGGAGAAGCGCGATCCATGGAGTCCGCACGGTGCTCCGGCACGGGATCTGGGAACTCCGGCACGTACGCGACGGAGATGACGGAAACCTTCAGATTCGAGGAGGAGATCCAGAGCTTGATGCGCGATAACAACCTCGTGACCCAAGGATTTGAGTGCTCTCCGACGGAGAACCATGGCGGCAGCTCCTTCACCGCCCTTCTCGGCCTCCATCCAACCCAAGCCATGGAGCTCCTGCACGAGCTGGATCCGAAGTCAGTCCAGTTTTCTCTCGATTTTTCCCCCTCCTTCCCTTCCGATGCCGCCCTAATGGAGCGCGCAACCAGATTCTCCATCTTTGCAGCCGCGGAGGACTCGCCTGAAGGGAGTTCCGCCTTTCCGTCCAACTCCGACGACAACAATAATGTCTCGACGAACCCTAGCAAACCCGATCCTCCGGATTCCTCCGATTTAAAGCCCCAACGAACGACGAAGAGGAAAGAATCCGAGAAGACCTCCAAGGCAAAAAATCAGGCTAAGAAGGGGAAATCATTCTCCGGCGACGAGGACGGTTGTTCTCCGGCGACTATCGACGGCGAGAAGCTGCCGTATGTTCACGTCAGAGCTCGGCGAGGGCAAGCTACGGATAGCCACAGTTTAGCCGAGCGGGCAAGGAGGGAAAAAATAAATGCCCGCATGAAGCTGCTCCAAGAGCTGGTCCCCGGCTGCAGCAAGATCTCCGGTACGGCGCTGGTGCTCGATGAAATTATCAACCACGTACAGTTGCTGCAGCGGCAGGTTGAGATCTTGTCAATGCGGCTAGCTGCAGTTAACCCGAGGATCGATTTTACTGGCCTCGACAGCATTTTATCTACAGAGCAGTGTGGGCGGGTCACGGCGTCGGGGCATGGGCTGGGCTGGACTGACGGCACCGCTAACGCCGTGATGAGACGGAGGCATCACTTGGTTCATCAGCATCATCCTCATCTTCATCAGATCTGGACCGTCGATCTGCAGCGGCATCAGCAGCAGGAGTGGGAAAGGGACGAGGCGCAACAGCAGCAGCACGTCTTCATCAGCGGCTGCGGCAGCGGAAGCCCACCGGGGACCTCTCTTTTCGGTTACGATTCCGTCACTTCTGGTAAATATGCTCCAAACCTCACCGCCCTCTGTTCCTCTTTTTATTATTTATTATTGATTTTTGAGAGCATCCTTTCTTTCTATGCACTCTATCCCATTGCATTCCTCAGCTCTCTTGTCGCCTTCAATTATAGAAGATATAGTTGATGTGTTGCGAATGTGTTTGGCTGGTGGGGTCATGATGGCGAGGGATTTTATTTCTCTTCTCTTAACATATAGGGATTTTTATTATTAGGCAACTTATCGAAACTAATTTCAAACCCTGGTAATATGCATTAAAATTATCATTCTGATAGAATGTAAATTATATAGGCATGACCAAAAGAAAACTCTTCAGAATAATGAGATGGAAGACCAAAAAAAGTACTTTTGCCATATTTACTACTCATGATAGCAGAAATCCCAAGAGAAAAATAGTAGAGATAGACCATTTTCTGATTAAATGCAGATAAATAAGATAGACAATTAGAACGCCAACCCAATACACTGAGTTAGCATGTGTTCAGCTTTGAA

Network for GWHGAAEX011506

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.25	HLH	204	251	1.70E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.940
SRP064423	SRR2545915	Juvenile tuber	33.500
SRP108465	SRR5643513	five period of Gastrodia elata	28.920
	SRR5643514	five period of Gastrodia elata	26.390
	SRR5643515	five period of Gastrodia elata	23.800
	SRR5643524	five period of Gastrodia elata	25.940
	SRR5643525	five period of Gastrodia elata	28.160
	SRR5643528	five period of Gastrodia elata	16.720
	SRR5643658	five period of Gastrodia elata	32.270
	SRR5643659	five period of Gastrodia elata	32.920
	SRR5643660	five period of Gastrodia elata	38.510
	SRR5643661	five period of Gastrodia elata	29.860
	SRR5643662	five period of Gastrodia elata	37.160
	SRR5643663	five period of Gastrodia elata	33.950
	SRR5643664	five period of Gastrodia elata	42.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	49.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.490
SRP279888	Gastro	Gastrodia elata tuber	29.38
	Juven	Juvenile tuber	38.70
	Mother_Gastro	Mother tuber of Gastrodia elata	28.15
	Mother_Juven	Mother tuber of Juvenile	32.41