Detail information of GWHGAAEX011507/evm.TU.scaffold_38.77
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|305662508|ref|YP_003858796.1| | 2.00E-91 | DNA topoisomerase VI subunit B [Ignisphaera aggregans DSM 17230] |
| nr | gi|672119300|ref|XP_008782884.1| | 0 | PREDICTED: DNA topoisomerase 6 subunit B [Phoenix dactylifera] |
| Swissprot | tr|Q9C5V6|TOP6B_ARATH | 0 | DNA topoisomerase 6 subunit B {ECO:0000255|HAMAP-Rule:MF_03165} |
| trEMBL | tr|D7SLA7|D7SLA7_VITVI | 0 | DNA topoisomerase 6 subunit B {ECO:0000256|HAMAP-Rule:MF_03165} |
| TAIR | AT3G20780 | 0 | topoisomerase 6 subunit B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 2124494 | 2159946 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011507
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02518.25 | HATPase_c | 53 | 219 | 1.00E-07 |
| PF09239.10 | Topo-VIb_trans | 404 | 562 | 3.20E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006265 | Biological Process | DNA topological change |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003918 | Molecular Function | DNA topoisomerase type II (ATP-hydrolyzing) activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.900 |
| SRR2545915 | Juvenile tuber | 13.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.610 |
| SRR5643514 | five period of Gastrodia elata | 13.380 | |
| SRR5643515 | five period of Gastrodia elata | 10.710 | |
| SRR5643524 | five period of Gastrodia elata | 13.220 | |
| SRR5643525 | five period of Gastrodia elata | 7.520 | |
| SRR5643528 | five period of Gastrodia elata | 5.850 | |
| SRR5643658 | five period of Gastrodia elata | 6.280 | |
| SRR5643659 | five period of Gastrodia elata | 9.980 | |
| SRR5643660 | five period of Gastrodia elata | 9.610 | |
| SRR5643661 | five period of Gastrodia elata | 8.260 | |
| SRR5643662 | five period of Gastrodia elata | 8.960 | |
| SRR5643663 | five period of Gastrodia elata | 7.940 | |
| SRR5643664 | five period of Gastrodia elata | 7.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.89 |
| Juven | Juvenile tuber | 8.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.65 | |
| Mother_Juven | Mother tuber of Juvenile | 5.59 |