Detail information of GWHGAAEX011512/evm.TU.scaffold_38.84


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|15828047|ref|NP_302310.1|1.00E-45cholesterol dehydrogenase [Mycobacterium leprae TN]
KOGKOG14300C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases
nrgi|743804979|ref|XP_010927322.1|0PREDICTED: short-chain dehydrogenase/reductase family 42E member 1 [Elaeis guineensis]
Swissprottr|Q9FX01|HSDD1_ARATH2.00E-503beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1
trEMBLtr|M0U8Q4|M0U8Q4_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP12950_001}
TAIRAT2G336300NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004122972072322219+
Transcript Sequence

Network for GWHGAAEX011512

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01073.183Beta_HSD152924.00E-87
PF14934.5DUF44993894712.50E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0006694Biological Processsteroid biosynthetic process
GO:0003854Molecular Function3-beta-hydroxy-delta5-steroid dehydrogenase activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.470
SRR2545915Juvenile tuber8.780
SRP108465SRR5643513five period of Gastrodia elata14.040
SRR5643514five period of Gastrodia elata14.140
SRR5643515five period of Gastrodia elata10.880
SRR5643524five period of Gastrodia elata12.570
SRR5643525five period of Gastrodia elata5.500
SRR5643528five period of Gastrodia elata5.810
SRR5643658five period of Gastrodia elata6.180
SRR5643659five period of Gastrodia elata12.020
SRR5643660five period of Gastrodia elata11.570
SRR5643661five period of Gastrodia elata11.540
SRR5643662five period of Gastrodia elata8.010
SRR5643663five period of Gastrodia elata8.080
SRR5643664five period of Gastrodia elata7.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.430
SRR6049655Rhizomagastrodiae_C368-T10_good_111.340
SRR6049656Rhizomagastrodiae_C368-T07_good_112.890
SRR6049657Rhizomagastrodiae_C368-T07_good_110.140
SRR6049658Rhizomagastrodiae_C368-T04_good_16.710
SRR6049659Rhizomagastrodiae_C368-T04_good_18.230
SRR6049660Rhizomagastrodiae_C368-T01_good_18.860
SRR6049661Rhizomagastrodiae_C368-T04_good_18.370
SRR6049662Rhizomagastrodiae_C368-T01_good_115.750
SRR6049663Rhizomagastrodiae_C368-T01_good_114.110
SRR6049664Rhizomagastrodiae_C368-T10_good_114.650
SRR6049665Rhizomagastrodiae_C368-T10_good_114.650
SRP279888GastroGastrodia elata tuber 7.71
JuvenJuvenile tuber17.66
Mother_GastroMother tuber of Gastrodia elata 10.77
Mother_JuvenMother tuber of Juvenile 16.08