Gene detail

Detail information of GWHGAAEX011515/evm.TU.scaffold_38.87

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2744	4.00E-115	DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain
nr	gi\|672110569\|ref\|XP_008796170.1\|	0	PREDICTED: AT-rich interactive domain-containing protein 3-like [Phoenix dactylifera]
Swissprot	tr\|Q940Y3\|ARID3_ARATH	1.00E-141	AT-rich interactive domain-containing protein 3
trEMBL	tr\|M0U8Q3\|M0U8Q3_MUSAM	5.00E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP12940_001}
TAIR	AT1G76510	4.00E-115	ARID/BRIGHT DNA-binding domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	2395649	2425331	+

Transcript Sequence
>GWHTAAEX011515 GTCATAGAGTTTTGAGTTCTTAGGGGCTGTTTTTGGTTCACCAAAACTATATCATTTAAAAGATGTCCGTAAAATTGAAGCTTTTTTTGGTTCAATGCTATCTACATCTAAAAAATTATCAAAATGCCACTTTATCTAACGTCGCCCGACGTTCTATCGCAAGAGTTCTTCGCGTTCGCTCTCCCGAAGCTCGCCTCTCGCTTTGCCGACGGCTCGCCCTCGCTCACGCCTCTCTGACGCCTCGCCGGCTCGTCTCGCTGACGCCTCGCCGGTTCGTCTCTCTGACGCATCGCCAGACGCAGAGGAATGAGTGAACCAGCAGAGAAGAATGAAAAGATGAAAAAAATTCCTGAGATATCTGATGGTGGAGTGATAGATGCAGGATTAAGAGATGGAGTGCCTTTTACTTCTTCAATAGAGGGTGCAGATGAGCAAAACAATCAGTTTCCCTCAGAGATAAAATTGGAAAAAGATGCTTTTTCTGGGCAGAATTTAGGGGAAAAGTCTTGCTTGGAGGGCACAATTATGCTGCCAGTGTCAAATACAGATGACAAAGCTGTTATTTTTTCGGCAAATCAAATTGAGAACGATTTAGTGCAGAAGGCTAATTTTGATGATAAAGATGGGGGAGATAATGATTTGAACAAGGAAAGCAATAAACATCATGAGAATGATCACACACTATTAGTGACAGATATGAAGGGAGCTAAATTAGAAGATGACCACTTTAACGAAACCCCCTTGACCTTGAAGCAAGAAGGATCTGCTGGGGGTCATCATTTTCAAGCGGAGGGTTTGAATCAGGCTTTTTCTTTTGAACCACATTATAGCGAAGGGGATGATTCCGGAACTGAGGAAGAACAAGCTGCTTTTATGAAAGAGCTGGAGAATTTTTTTAAGGAGAATAGCTTAGATTTCAAACCACCTAAGTTTTATGGGGAAGGATTAAATTGTTTGAAATTATGGAGGGGAGTTACAAGGTTGGGTGGTTATGATCAGGTAACTCAATGCAAACTATGGCGCCAAGTTGGAGAATCTTTTAAGCCACCAAAGACTTGCACGACTGTCTCGTGGTCATTTCGGTGTTTCTATGAAAAGGCCCTTCTTGAGTATGAGAAATTCAAGGTTCGTAGTGGTGAGCTTCTAATACCTGTTGCCCCTATTCCCGAGCCTACTTCTGTGGACAGTCAGGCTGTGAGCAATCAAGCATCAGGTTCAGGCCGAGCCAGAAGGGATGCTGCTGCACGTGCTATGCAAGGTTGGCACTCTCAAAGGATGCTTGGTAATGGTGAAGTTGGAGATCCAATTATAAAGGACAAGGGTTCGGTTTCTCTTTTCAAGAAGGATAAGCATCTTAAATCCATTGGTCAATCATTAAAGAGGAAGAAGGCGTCTATTCTCGATCGTGGAGTTAAAGTAGCAAGAACCAAAAGTCTGAAGCCTCAAGAGGACTCCATGGTAGTTGATGTAGGCGCACCTGCTGATTGGGTGAAGATAAATGTACGCAGAACGAAAGACTGCTACGAAGTCTATGCTTTAGTTCCTGGCCTCCTACGTGAAGAGGTGCATGTTCAGTCAGACCCTGCGGGCCGCCTGATTATATCAGGTGAACCGGAGCAACCCGATAACCCGTGGGGCGTCACTCCTTTTAAAAAGGTGATCACTTTGCCGTCGCATATCGACCCTCATCAGACGTCGGCGGTGGTTACGTTACATGGCCAGCTGTTCGTGCGCGCCCCTTTTGAGCAGCAGGATTTGTAGCACAGTAGCAGTGGCTTTCTTTCTTTCCAGCAGCTATATTTTGAGCGTTGGCTTTTGCTGAGGAGGTTTTTGATGCAGTAGTGTAGAAGTAGCCTTTCTTGTTCTATTGGTTCTATATATCTGGCAACAAAGCTTTCGCATTCTTCCAGCCTATGACCCCAGAAGTAGAAAGTTTTTATTTTAAAAAAATGTACAATTACAAGAAAAATCATATATATATATATATATATTCTATCATTTTAGCCATATTTAATGTTCCTTTGAGGGATGGTTATTCCCATAACACCACCCAAAATATTTGCTATTCTGCATATTTAACATCCAATTTTTTATTTGTATTTTACAAAACTACTGCAAACGTGAAATCTCATTTGCCTGTGTAATGATGAGAGTGTATATGTATCGAAGTTTGGGGGTTGAATGTGTAAATAATGGAAGATTGAATGTTATGAATGAAGAATTCCCATACTGTTCTTTAATTGTTATCTTAGTGTTCAGTGTTTAGGGCTTAGAGTTTAGAGGCAACATACCTCAAGTTGTCATGTTGTAGTGTCTTACTTTATATTTATGCAATGAGGGCTTTTTTCCTTCATGGAATTCTTTTGAATCCATATCCTCGTTCATTGAATATCATATTATTTTGGTAAAGCTGTTTAATTAGGCTTGCCATCAAAAGCACAATACGCGCATTCTGCACAGAAAGGACAAAAGATTATATACAAGCAACAATACACCCAACCAAAGCAACTTCAACATCCAAGCCTTGTGTTACTATGGGAGATCTCAGTAGCAATCATTAAACAAAGACGGGTAGCATATAAACCCTAGCATGATGGAGAACTTGATGTGTTTAAAATGTAGTAAGCCCAATACATGTATATTTTGATAATTTAGAGAGAGCTCTCTAATGAGTTTAATCATCTTCGTGATGCTAAGAAGTCAGATAATGTCATTATCATTCACACTATCAGCTGCTTGCTAAAATATTGCAGTCAGCATGAACTCTAATTTTAAGCACTCTAAAAATTGGGAATTGACAGAATGGAGTGTGCGACAGAGGAGTGTATGTGTGTGCACCTGCACGTGTGTAACAAGATGTTTACTATTTAATCTAGAATAATTAAAATTAAGGGGAGAACAAAGAACAAGAGGTAAGGGGCGTGCCATTATTTTTATTTGGATCAGCTGCTCATGCCCAAACACCCATCACCTGAATGCCACTAAATATTTGTTTAATCCTTCATAATTCTCCCTGGCGTTCTAGAAGTTAATTCGCATTCTATTGACCTAGAAGAAAATCACACAAGCTCCACTTCTTCTGCTCACTTGTGCATGAAGGATTGATGCCCACAATTAAGATCACGTATATACTTTTCTTCCGCTCACACGAGCATGGACTGTCACCACGATTGAGACCGCACGAGCTTCGCT

Network for GWHGAAEX011515

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.20	ARID	186	270	1.10E-15
PF00011.20	HSP20	399	481	3.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.650
SRP064423	SRR2545915	Juvenile tuber	42.580
SRP108465	SRR5643513	five period of Gastrodia elata	35.270
	SRR5643514	five period of Gastrodia elata	34.410
	SRR5643515	five period of Gastrodia elata	32.410
	SRR5643524	five period of Gastrodia elata	33.120
	SRR5643525	five period of Gastrodia elata	43.120
	SRR5643528	five period of Gastrodia elata	30.460
	SRR5643658	five period of Gastrodia elata	37.580
	SRR5643659	five period of Gastrodia elata	41.350
	SRR5643660	five period of Gastrodia elata	40.460
	SRR5643661	five period of Gastrodia elata	32.960
	SRR5643662	five period of Gastrodia elata	35.860
	SRR5643663	five period of Gastrodia elata	42.670
	SRR5643664	five period of Gastrodia elata	43.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.660
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	51.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.380
SRP279888	Gastro	Gastrodia elata tuber	48.26
	Juven	Juvenile tuber	60.38
	Mother_Gastro	Mother tuber of Gastrodia elata	51.62
	Mother_Juven	Mother tuber of Juvenile	64.86