Gene detail

Detail information of GWHGAAEX011516/evm.TU.scaffold_38.89

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4197	FOG: PPR repeat
nr	gi\|743779132\|ref\|XP_010920030.1\|	PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Elaeis guineensis]
Swissprot	tr\|O04659\|PP398_ARATH	Pentatricopeptide repeat-containing protein At5g27110
trEMBL	tr\|F6HA18\|F6HA18_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49038.1}
TAIR	AT5G27110	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	2426375	2437911	-

Transcript Sequence
>GWHTAAEX011516 GAAGTCTTCAAATTGGAAACAAACAAAAATGAAGATAATGAATGTTCAGAACCTCGTAGCCTGGCTGACAACGCCCGCAGTTCCCAAATCTCTGGCAAAGGGAAAACTCCTTCACGCCAAAGCAATCTCTCTCGGGCTTCAGCAGGCCATCGATCTCTGCAAATCTCTAATCAACTTCTATGTCTTCTTCCGTCTCTTTGATTCCGCTCGACTTGTCCTCGAAACTATCGAGAGTCCGTCAGATATTTCGCTGTGGAATATCCTCATCTCAGCTTATTCCAAGAATCAAATGCACAGAGCCGCCCTTTTGCTGTATAGTAAATGTCTTCTCTCTCCCTATGTTAAACCTGATTCCTACACTTATCCGAGTGCTCTGAAGGCTTGCGGTGGATTGGGTAATGCGTGGAAGGGCGAGATGATTCACACCCATTTGTTCAAATCGGGTTTTAGCTATGATATCGTCGTCTCGAGCTCTCTTGTTGGCATGTATGCCAAATGTGGCCTTTTCAATTCTGCCATCAAGCTGTTTGAGGAAATGCCTGAGAAAGATGTTGCCTGCTGGAACACGGTTATATCTTGTTATTATCAGGATGGTCAGGCTTTGAAAGCTCTTGGCATATTTGAGGTAATGAGATCTAATGGCTTTAACCCCGATTCTGTGACCTTCTCCATTGTTTTCTCTGCCTGTGGGAGGCTTTTGGATTTGGAGAAGGGGAAGAGATTGCATGAAGAATTGGTAAGCACTGGGCATGAGATTGATGCTTTTGTTGGGGCTGCTATTGTTGACATGTATGGTAAATGTAAGTGTTTGGAAAATGCAAGAGAAGCTTTTGATCAGATGCCTGTGAAGAGTGTTGTTGCTTGGAATTCAATGATAAATGGATATGGCTTGCAAGGGAATGCCAATGCGTGTTTGAATCTTTTCTCGGGGATGAATGCTGAAGGAGTTAGGCCTACTTCCAGCACTATAAGCAGCTTATTGTTAGCTTTCTCAGGAACTTCCGATTTATTGAATGGAAAATTTATTCATGGATTTGTGCTACGAAACCAAATCGATCTCGACATTTTTGTTGCCACGTCGCTCATTGATTTTTACTTCAAATGTGGCAAGGCCAGGTACTCGGAGTTTATCTTCCAAAAAACAGGGAAAAAAAGTGTAGTTTTTTGGAATGTTATGATCTCAGGCTACGTTACATCAGGCAGTGACTTTGAAGCTCTTGGTGTTTTTCACAACATGAAGATGCATGATGTAAAGCCGGATGCCATTACTTTTACTAGCTGTTTATCTGCTTGTGCTCATTTAACTGCTTTACAGCAAGGTAGAGAGATCCATGAGCAAATTAAAAGTTGTAATTTTGAATCTAATGAAATTGTCATGTGTGCGCTTGTTGAATTATATGCTAAATGTGGAGCAGTCAGTGATGCAAGATCGGTTTTTGACAAGTTATCAGTCAAGGACACTGTGTCTTGGACATCTATGATTGTGGCATATGGTTCTAACGGCCAAGCTACTGAAGCTTTGGCTCTCTTTCGAGAAATGCAGAGAATTAAGGTAAGACCAGACCGTGTTACATTTCTAGCATTAATGTCGGCATGTAGTCATGGAGGAATGGCTGACGAGGGTATCTCTTATTTCTATCACATGACATCAAAATATAAATTAGAACCAGGATTGGAACACTACTCGTGCCTAATCGATCTTCTTGGACGCTTGGGGAGGTTGTGTGAAGCTTATGAAATTCTACAGAGCTCATCAGTTTATAAAGCAGATATTGGCTTGTTGGGATCATTTTTATCTGCTTGCAAATTACATGGGAACTTGGAGTTAGGAGTCGAAGCTGCCAAGCTTCTTTTAGAGATTGAGCCAAATGATCATTCTACATATATAGCACTGTCCAATATGTATGCTTCTGCTGGAAGATGGGATCAGGTGCGCAAAGTGAGATCAAAAATAAAGGAAAAGGGATTAAGGAAGAATCCTGGATGTAGCTGGATTGAAATAGACAAAAAGATCCGCCAGTTCTTTGTGGAAGATTACTCTGATCAACAAATAAAGTTGATATGTGAGTGTCTGGAGATTCTTTCATTTCACATGGAAGATGATTTTGATATACTAGAGTTTATGTTTTGAGGATTCATGTATTAAAGAAAGCGTGGAAAACTAATCTTTGATCCTAGCCTCAAAGAATGATTTTTCTAAGCCTAATTGTTTGATGGTGACTGATAATTTCATTTATGAAATGTGTTTCAAGGAAGAAATCGATTCAATTTGTTTTTCAGAGTAATATTTTTGGATATCAGATATTGGAATGAAACTCCAGTTACTGACCAACTAATTTGCCATTCATCATCACATGGAAATGTGCACACTTTCACATCTACATGGAAACAGCTTCTCTGCAAAAGTAAATTTTTGATATTGCAATGATGCAAGTCGTTTCATAGCAGTCTTTCACAAGAGAAATGAACAGAATCACAATTGATGCAACTCTCCAATGGTCCGCAGATTCTTGTACAGATACGAAGCCAAGATAATGGTGTTATCATCAACCATTTTCCATGAATTTTATGTTGCGGGTCTTATGACCATCATTTGTACGCTCTGGATTATGAAAGCCACCTGTGCATTTCCCAGTTTTTTGTAGTGGAATTTATGGTTCTCCTGCACTAGACCAGGTAATTATTTAGCTATATTGAGATTTCGACTCCTTTTCTCTTCATCAGATGTGATAACACATGAGTTCGATATTTATTTTGCAAGAATAACAGCAACAATAAAACCAAGACTTGTCTACTAAGTGAGGTTGGCCATTTGAATCCTTTGAGGTTGGCTCATTTGGGCAAAATTCATACACTCAATT

Network for GWHGAAEX011516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	75	98	0.014
PF13041.5	PPR_2	173	221	4.30E-13
PF13041.5	PPR_2	274	321	7.50E-09
PF13041.5	PPR_2	375	423	2.30E-10
PF13041.5	PPR_2	476	524	1.50E-10
PF01535.19	PPR	618	647	0.26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.480
SRP064423	SRR2545915	Juvenile tuber	3.450
SRP108465	SRR5643513	five period of Gastrodia elata	2.550
	SRR5643514	five period of Gastrodia elata	3.050
	SRR5643515	five period of Gastrodia elata	2.050
	SRR5643524	five period of Gastrodia elata	2.410
	SRR5643525	five period of Gastrodia elata	2.900
	SRR5643528	five period of Gastrodia elata	3.660
	SRR5643658	five period of Gastrodia elata	2.660
	SRR5643659	five period of Gastrodia elata	4.830
	SRR5643660	five period of Gastrodia elata	4.210
	SRR5643661	five period of Gastrodia elata	4.800
	SRR5643662	five period of Gastrodia elata	5.110
	SRR5643663	five period of Gastrodia elata	3.960
	SRR5643664	five period of Gastrodia elata	4.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.200
SRP279888	Gastro	Gastrodia elata tuber	5.07
	Juven	Juvenile tuber	2.10
	Mother_Gastro	Mother tuber of Gastrodia elata	2.42
	Mother_Juven	Mother tuber of Juvenile	1.37