Gene detail

Detail information of GWHGAAEX011517/evm.TU.scaffold_38.90

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15678100\|ref\|NP_275215.1\|	6.00E-21	O-linked GlcNAc transferase [Methanothermobacter thermautotrophicus str. Delta H]
KOG	KOG1126	0	DNA-binding cell division cycle control protein
nr	gi\|743767232\|ref\|XP_010913871.1\|	0	PREDICTED: cell division cycle protein 27 homolog B isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8LGU6\|CD27B_ARATH	0	Cell division cycle protein 27 homolog B
trEMBL	tr\|M0S1D2\|M0S1D2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P19740_001}
TAIR	AT2G20000	0	CDC27 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	2438963	2517131	-

Transcript Sequence
>GWHTAAEX011517 TCTTGGGGCACATCCTTCGATTTAACGGATACTCCACAATCTTTTTCGAAATCTAGCACTAAATTTTATAAATTCCATCCCAGCTCATAGTTCTTGCTCGGCTTCTTTGTCCCCTCCGACCTTCTGTCACCAGTACAGAACCCTAACTTATAGAGTGAGAGGATATCTGCTTCATTCAGCCGGATAAGCCAAGAAGAAAACTTATGATTTTTAGTGGAGTGCGAGAAGCGAACATGGAAACCCTAATGGTGGACCGAGTACAGAGCAGCCTTAACCAATTTATGCACCAGAATGCAATCTTCCTCTGCGAGCGTCTTTGCGCCGAATTTCCCACCGAGCTGAACTTGCAACTGATGGCGACTTGTTATCTGCGGAACAATCAACCTTATTGTGCTTATCATGCTCTCAAAGGGAAGCAGATGGCTCTATCACGCTATTTATTTTCACTTTCATGCTTCCAGATGAATCTTTTGAGGGAAGCAGAAGCAGCCCTGTGCTCAGTCAATGAACCAAACTCTGAGGTTCCAAATGGAGCTGCTGGTCATCATCTTCTTGGCCTTATTTACAGGTACACAAGTAGAAGAGCATTTGCCATTGATCACTTTATGCAGGCATTGGCTATGGATCCTCTTTTGTGGGTTGCATATGAGGAGTTGTGCGTGCTAGGTGCTGCGGAAGAGGCAAATGTATGCTTTAATGATGCAGTTGCTGCTCGAATTCAGCCACAGTATTTTCTTGAGTCGAGCTCTCAGTGCACTGATGGAACTAATGAGGATCATAGCATGTCTTCTAGTAGGACCACGGGCTCACAAGATAGTCCGAGACAATCAAAACAAATACATGCTATTAACAATATTCCTTGTTATCCTCAGGGTGCTGTAAATACATCAATGCAGTCGGTTAACTGTGCATCTTCTAATTCATCACTGTACAACACACCTTCTTCCCTTGTAACTCAGCTATCGAGTGTTGCTCTGCCTAATGTATATAAAAATGCATGCTTAAATGCATTAGGAGGCGATGGTTCTTCTAAACTTAATGCTCCTGGCACCATTCAGTCTCCAAGAAGAAAGTTCATGGATGAAGGGAAATTAAGAAAGGTTTCAGGGAGACTTTTTTCTAGTTCGGATTCTGGGCCCAGAAGAAGTGCAAGACTCTCAGGAGATACAATGGCTAATGTCAACCTCCATTCCACTCAAACAGGTGCAAATGGTACAACTTACTCTTCTGCAAAAGTTCTTGGAGGATTCCCTTCATCTAAAATGGGCTCAACAGCTCTTCGTTCTCTGTCAAATCGGAAGGTTCAACAAATGTCTGCTGAAAGTTTTGATGAAGGGAGAAGACCGGATGCTATTGATGTTGCTTGGTCTCAGGCTGCTGCAACAGCCTCTTCTTCATCATTGTTGGTGTGTGATGGTGGGAACACCGAACAAGAAAGGGGATATCCGGCTGGTAATAGTGCTTTAGGTCATGAATCAGGTGTGAATGGTGCCAAGGAGCTACTACATCTCTTACGAATTCTAGGAGAAGGCTATAGGCTTTCTTCTCTATACAGGTGCCAGGATGCGTTAGAAGTTTATCTTAAACTTCCACAAAACCAGTATAATACTGGTTGGGTTTTATCCCAGATAGGTAGACTGTACTTTGAGCTGGTTGAATATTTTGAGGCTGATCGATTCTTTGATTTAGCCCGGCGGATATCTCCTTGTACATTGGAGGGAATGGATGCCTATTCGACTGTTTTATATCATTTGAAGGAGGAAATGAAGCTAAGTTACCTTGCCCAAGAGCTTATCTCTATTGATCGGTTATCTCCTCAAGCATGGTGTGCCATGGGTAATTGCTACAGTCTACAAAGAGACCATGAAACGGCGCTAAAGAATTTTCAACGTGCAGTTCAGCTTGATTCTAGATTTGCCTATGCTCATACTCTTTGTGGCCATGAATACATAGCACTAGAGGATTATGACAATGGGATCAGGTGCTTCCACAGTGCCCTCCAAGTAAACGAAAGGCATTACAACTCTTGGTACGGCCTTGGGATAGCATTCCTGCGCCAAGAGAAATATGAGTTTGCAGCTCATAATTTTCATCGATCGTATCACATAAACCCGCTTTCTTCCATCATCATGTCCTATCTGGGAATGGCTTTGCATTCTTTGAAGAGAAATGATGAAGCTTTGGCTTTGATTGACAAGGCTATTGTAGCTGATAAGAAGAACCCTCTCCCGATGTATGAAAAGGCCAACATTCTTGTAAATCTTGAGAGATATGATGAGGCTCTTGAGGTTCTGAATCAGCTTCTGGAGTTTTCTCCTCAGGAGAGCAGCGTCTATGCACTTATGGGAAAGATCTACAAGATACTCAACAAGCCCGACAAGGCCATGTTTTATTTTGGTACTGCACTAGATTTAAGGCCCCCTGCTGCTGATGTTGCAGTCATTAAGTCGGCGATGGAGAAGCTGAACCTGCCTGATGAACTGGAGGACTCACTGTAAAATTGAGCCTTTGGAGAATTCTCCTACCTCAGAAACCCTAGAGAGCAGCAGCAGGCTGGGCTTTCGAAAAGGCCATCCTCGTCTTAAAATATTAATAATAATAAAAGTTCCTACCAAGAATTTGCTGAGGGTTCGGCCTGTGTGTAACATATCTGATATAAATATATCATTTTTGTAGGGCTTAGAATGTGTAATTATAGGGACTCAAATCTGACATTGTTTGAACTGTTGTAGCAATTGAAAATCGCAGGCAGGACTGTGGTGGGTGGGGTTTTTCATATTAAAATTTATTTTTTTAATCTTGAATGAATTTTTAATCATATTCTTGTGAGCCTTTTATTTTAGAAGCACCAGAAAGCTTCTTCATTATGTGCCCAATACCAATGCTGTGGTTTTTATAATTATGGTAGTGATTGAAGAAGGTTTTGTCCCTTTCAAATTCATTTGCATTGCCTTCTACTATATAGATTCATCCTTAATTATTGCTGATCGAAATCTTGGTGAGCCAGCAGCCTCCATGGAATATGGAAGGTTCAATTCCCATTAAAAGGTCCACTAAGGATGATGGCAAGAGCATTGATGAAGATCCATCCCAAAGTTCGAT

Network for GWHGAAEX011517

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12895.6	ANAPC3	24	98	6.70E-15
PF00515.27	TPR_1	539	570	1.70E-07
PF13432.5	TPR_16	579	623	0.0014
PF14559.5	TPR_19	655	717	3.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03350	APC3, CDC27	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.810
SRP064423	SRR2545915	Juvenile tuber	22.940
SRP108465	SRR5643513	five period of Gastrodia elata	12.570
	SRR5643514	five period of Gastrodia elata	10.960
	SRR5643515	five period of Gastrodia elata	10.360
	SRR5643524	five period of Gastrodia elata	10.620
	SRR5643525	five period of Gastrodia elata	13.120
	SRR5643528	five period of Gastrodia elata	10.680
	SRR5643658	five period of Gastrodia elata	13.070
	SRR5643659	five period of Gastrodia elata	14.730
	SRR5643660	five period of Gastrodia elata	16.800
	SRR5643661	five period of Gastrodia elata	13.980
	SRR5643662	five period of Gastrodia elata	17.990
	SRR5643663	five period of Gastrodia elata	18.310
	SRR5643664	five period of Gastrodia elata	18.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.230
SRP279888	Gastro	Gastrodia elata tuber	18.11
	Juven	Juvenile tuber	17.24
	Mother_Gastro	Mother tuber of Gastrodia elata	11.76
	Mother_Juven	Mother tuber of Juvenile	17.54