Gene detail

Detail information of GWHGAAEX011518/evm.TU.scaffold_38.91

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|470181905\|ref\|YP_007567780.1\|	2.00E-28	RalF protein, translocated into host cells by the Dot/Icm system [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
KOG	KOG0929	0	Guanine nucleotide exchange factor
nr	gi\|743767228\|ref\|XP_010913869.1\|	0	PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Elaeis guineensis]
Swissprot	tr\|F4JSZ5\|BIG1_ARATH	0	Brefeldin A-inhibited guanine nucleotide-exchange protein 1
trEMBL	tr\|F6I0P9\|F6I0P9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60515.1}
TAIR	AT4G38200	0	SEC7-like guanine nucleotide exchange family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	2522359	2535550	+

Transcript Sequence
>GWHTAAEX011518 ATAACAATATCAGTTTCTTAAACAAATTGTTATAAATTTAAATTAACCGCAGCAACAAATTTTCTGCGGGAATCACACTTCGAACCCTCGTCTGTTCTTCCCACATCGCAATTCTCGACTACAGCTCCGTGTACAGCTGCCAGAGGAGAGGGATGAGATCCTTGAATTTTCTCATTCCCCTTCCATTTCTCCCCCCTTCTCCTCCGAACTAGCTGTACTCTCCTCGATCCACTCTCATGTCCTCCCAGCAACTCGGCGGTGCCTCCCGCGCTGGCCGCGTGCTAGGTCCTTACCTCGACCGCATCATCAAGAACGCGGCATGGCGCAAGCATTCCGCCCTCGTCGCCTCTTGCAAGTCCATCCTCGATCTCCTCGAATCACTCTCTGAATCCCCTTCAGAAACCACCTCTCTCCTCGTCGGCCTGTCAGCCGCCGACGCTGAAGCCTCTCTCGGCCCCCTCATCCTGGCTCTCGAAGCTGCCTCTCCCAAGGCCACCGAACCCGCCCTCGACGCAGTTCACCGCCTGATCTCACTCTCCCTCCTCCGTGGCGAGATCGACGACGCATCCGTCTCTGATGAAACCGCATCCGTCGCTTCTCGCCTCATAGGCATGGTTTGCGCTTGCGGGAGGCTAGGAGAGGAGTCGCTCGAGGTCGGAATGATGCGTGTACTCGTCGCCGCCGTTCGATCTACATCGCTTGTGCTCCGCGGGGAGTGTCTCGTACATGCCTTGAAAAGCTGCTATAATGTGTATTTGGGAAGCCAGAGCAGTGTCAACCAGTTGTGCGCAAAGGCTGCTCTGGCTCAGATCCTTACGATTGTCTTCGACAGGGTGAAAGCAGATGCAATGCATATCCCCATCAAGACGATATTGATCGCCGACCTACTGGACATCATGGATAAGAGCTTAAATGATTCAAATATCGTGCAGGCAGCCGGAAGTTTTATAATGGAAACAATGGGAGGGGATGAAGTGGATGTCGCAGAGGGGAAACCTCTGGATTGCCAAGTTGGAATGGGTGATGCTAGTGGAATGAGTAAAATTAGGGAGGATGGCTTTCTCTTGTTTAAGACTTTGTGTAAATTCTCCATGAAGTTTGCTGTGGCAAGCGAAGATTCCGAGGATCCACTTTTCCTGAGGGGCAAGGTACTATCCTTGGAGCTATTGAAGCTGGTGATTGAAAAGGCAGGTTCATTCTGGCTTGTTAATGATAGGTTTCTTGGGGCTATTAAGCAATACCTTTGCTTGTCATTGTTAAAAAACAGCGCATTGTCAGTGATGAGTATCTTTCAACTTCTATGCTCAATTTTCATGGAATTATTGCTAAAGTTTAGATCTGGTCTGAAAGACGAAGTTGGGGTATTCTTTTCTATGCTTGTCTTGAGAGTTCTTGAGAACGTGCTTCAGCCAAGTTTCTTGCAGAAGATAATTGTTCTCGGTTTAATTGAAAAAATGTGTCAGGATTCTCAGCTTATCATAGATATCTTTGTGAATTACGATTGTGATGTTGATGCAACAAATATATTTGAAAGGATCATTAATGGTCTTGTGAAGACTGCTTTAGGAGTGCCTGCCGGATCCGCAACAAGTTTATCTCCAGTTCAGGATGCTACACTTCAGACTGAATCTATCAAGTGTCTAGCTACTATTATGAAATGCATGGGAACATGGATGGACCAACAACTGAGAATTGGTGATTTTCACCCACAAAATTCTGATATTGATCACTCAATAGAGAAATATAGTACTACTAATGGAGACGAGGTAACTAATATGGATTATGATTTGCACATTGATACAAACTCTGGATTGTCAGATGCTGCCACACTTGAGCAAAGACGGGCCTACAAAATAGAATTCCGGAAAGGAATTTCACTATTTAATAAGAAGCCTTCTAAGGGCATTGAATTTCTGATCAATACTAAGAAGATAGGTGGTTCTCCGGAGGAGGTGGCTTCATTTTTAAAAAATACAGCTGGTTTATATCCAACTATGATTGGAGATTTCCTGGGAGAAAGAGATGAATTTCCTATAGAAGTTATGCATGCTTATGTGGATTCTTTAAATTTTGAGCGCTTAAATTTTGCGGATGCTATTAGGTTTCTATTACAAGGATTTAAATTGCCTGGAGAAGCACAAAAGATTGACCGCATCATGGAAAAATTTGCTGAGCGCTATTGCAAATGTAATGCAAGTGCCTTTACTAGTGCAGATACACTTTATGTCCTTGCATATTCAGTAATAATGCTTAATACAGATGCACATAATAGCACGGTGAAAGACAAGATGTCAAAATCTGATTTCATCCGTAACAATCGAGGGATAGATAATGGAAAAGATTTGCCAGATGAATATTTGAGTTCCTTGTATGACCAAATTGTGAAGAATGAAATTAAAATGAACACTGATGATACATCAGCCGCTCAGAGTAAGCAGTCAAACAGCATCAACAAGCTTCTGGGTTTAGATAACATCCTCAGCTTGGTCAACTGGAAGCAAACTGAAGAAAAGGCATTAGGTGCAAGTGAGATGCTGATCAAACATATCCAAGAACAATTTAAAGGAAAAAGTGGAAAATTAGAACCTATGTTTCATTCCGTCGCTGATATAGCGATCTTAAGGTTTATGATGGAAATTTGTTGGGCACCAATGATGGCTGCTTTTAGCGTAATGCTTGACAAAAGCGAGGACAGGGCTGCAACATCTCAGAGCTTACTAGGCTTTCGATATGCTGTTCATGTTACATCGGTCATGCATATGCACACACAGAGAGATGCGTATGTTACATCGGTTGCCAAGTTTACTTACCTTCATTGTGCTGCCGATATGAAGCAAAAAAATGTTGATGCTGTCAAGGCTATAATGTCCATTGCGATCGAGGATGGCAATCATCTGCAAGAAGCATGGGAGCATGTTCTGACTTGCCTTTCACGATTCGAGCACCTGCTCCTTCTAAGCGAAGGCGCGCCTCCGGATGCATCGTTCTTCTCCGTCTCCAACGACAAGCAGTCGCCAAGGCCTTCCTCCCTCGCCTCGAACTTAAAGAAGAAGAAGAAAAAGGAGGGGAATGCCCTTCAAAACCCGGGTGTCATGGCTGCCGCTCGTGGGGGCTCTTACGATAGTTCGTCGGCTGGACAACACAGCATACCGGGGCTGGTTTCTTCTGAGCAGATCAACACTTTCATCTCGAGCATACATCTGCTGGACCAGATCGGAAGCTTCGAGCTGAACCACATCTTTACTCACAGTCAGAGCTTGAACGGCGACGCTGTAGTCGCATTCGTGAGAGCCCTCTGCAAGGTCTCCATGGCGGAGCTGCAGTCCCCAGCCGACCCCCGCGTCTTTGGTCTCACCAAATTAGTAGAAATTGCGCACTATAACATGAATCGGATCAGACTGGTGTGGTCCCGAATATGGAGCGTTCTATCGGAGTTCTTCGTGTCGGTGGTGGGACTGTCTGAAAATCTGTCGGTGGCATTCTTTGTGATGGACTCACTGAGGCAGCTCGCCATGAAGTTCATGGAAAGGGAGGAGCTGGCCAACTACAATTTCCAGAACGAGTTCCTGAGACCCTTTGTTGTCGTCATGCAGAACAGCCCTTCCTCCGAAATCCGGGAGCTGATCGTCAGATGCGTTTCTCAGCTCGTTCTCAGCCGAGTCGCCAACGTGAAGTCCGGATGGAGGAGCGTTCTCCAGGTATTCAGCATCGCGGCGGCGGATGAGCGGAAAAATATCGCGCTGTTGGCGTTTGGAACTGTGGAGAGAATAATCCGAGATTACTTTTCCCACATTATAACCGAATCGGAGACCGCAGTTTTCGCGGACTGCGTGAGCTGCCTCGCCGCTTTTACAAACAGCAGCCTGAGCGCCATCGCTTGCCTGCGCTTCTGCGCAGTCAAGCTCTCCCAAGCAGCGCTCCCCGAAGGCTTCTGGCTTCCGTTACTCTCTGGTTTATCAAAGATAGCATCCGACCCCAGGGCGGCTGCCAGGAAGGAGGCCCTGGAGGCGCTCTTCCGCATTCTGAAGGACCACGGCCACCTCTTCTCCGCCGCTTTCTGGAGCCGCGCTTTCGATTCCGCCATACACCCCATTCTCAAGCAGCTCCAGGCTCATCACCGCTGCTCCGACGGCGATGATGAGCCCCCCTCCCATTCTGAGATCCGAGCATCGGCGGCCCTGCGCACCGCCGATCTCCTCATCACTTTCTTGGACGCCGTTCGGCCTCAGCTGCTGCCCGCTGTCGACCTTCTGTCGGCCTTCGTGCGAAGCCCCCGCAGGCAATCATCGAACGCCGGCTTGGCCGCCCTGCTGCTGCTGACCGAACGCTGCGGCAGAGATCTCTCTGGCACCGAGTGGACGCACTTGCTGTCGGCCATCGGAACCTCCGCCTCGTCCTCCTTCCGTGTCGCCTCAGAGCTCGCCAGCATCCTGTCCCACGTCGAGCTCCCGGACTACTCCGACGCCGCCGGGGACTCTTCTGACCTCGAATCCGCTGACGAGAATGCGGACGCGGAGAAGGCGTTGGCCGCCGTGGCAATTCTGAAGGATCATATGTCCGTGCTGCTTTCGATCGTCGAGGCTGTCCGGAGGCTGCATGCGACCAATCGGAAGGTGCTGTTGGGGCCCCACGTCAGCATCCTACTTGGCGTGCTCTCGTCGGCGGTGTCCCACGCGGGCGAGTTGAGCTCCCGGGCTGGCCTGCGGTCGAAGATGGAGAGTGTCTGCTACCTGCTTGAGATCTCTGAGCCGCCAGTGGTCCATTTCGAGAACGAATGCCACCGGAGCTATCTTGCAGTGCTGAAGAAGGTGCACGAAGAAGACGACGGCGACCCTTCCGCCGTCTCCATGATCATTTCCGAGTGCGAGGAGATGCTCGGAATCTACTTGGACTGCGCAGGATTCCGGTCGCCGGAGCTGCAGAAACGGCTGCCTCTAGCTTCGTCTGCGAAGGAGGAGCTCTCCGCCAGAAGCCCGCTCGCAGTGCTGGCTCTTAGGGCGTTGTCTGAACTCGACGACGCCACCTTTCACCAAAATCTGGGCCTCCTCTTCCCCTTGCTGGTTAGCTTGATTCGCTGCCCGCATGGCTCGCCGGAAGTGTCGCGTGCTTTGCACTGCATCTTTCAATCTGCAGTAGGTTCGATACTCTCAGGCTTGTGATTATTTATTTTTTTATGATTGTATTTTTCAACTTTATTTTTTTTGTATCCATTCTTATTTTCTTATTTATATATGTATTATTGATTTTGTTGAGACAATAGATCTATTTTAAGATGATTTGTTAATGCGTCGAATATTACTCAAAATCTCGTTATATTGTTAAATGGATTATATCATTTTTTGGAGAGTTTTGATAAAATTGAAAGGA

Network for GWHGAAEX011518

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16213.4	DCB	20	203	3.60E-25
PF12783.6	Sec7_N	272	430	7.40E-37
PF01369.19	Sec7	539	720	2.40E-63
PF09324.9	DUF1981	1094	1176	9.40E-30

Protein Sequence

>GWHPAAEX011518
MSSQQLGGASRAGRVLGPYLDRIIKNAAWRKHSALVASCKSILDLLESLSESPSETTSLLVGLSAADAEASLGPLILALEAASPKATEPALDAVHRLISLSLLRGEIDDASVSDETASVASRLIGMVCACGRLGEESLEVGMMRVLVAAVRSTSLVLRGECLVHALKSCYNVYLGSQSSVNQLCAKAALAQILTIVFDRVKADAMHIPIKTILIADLLDIMDKSLNDSNIVQAAGSFIMETMGGDEVDVAEGKPLDCQVGMGDASGMSKIREDGFLLFKTLCKFSMKFAVASEDSEDPLFLRGKVLSLELLKLVIEKAGSFWLVNDRFLGAIKQYLCLSLLKNSALSVMSIFQLLCSIFMELLLKFRSGLKDEVGVFFSMLVLRVLENVLQPSFLQKIIVLGLIEKMCQDSQLIIDIFVNYDCDVDATNIFERIINGLVKTALGVPAGSATSLSPVQDATLQTESIKCLATIMKCMGTWMDQQLRIGDFHPQNSDIDHSIEKYSTTNGDEVTNMDYDLHIDTNSGLSDAATLEQRRAYKIEFRKGISLFNKKPSKGIEFLINTKKIGGSPEEVASFLKNTAGLYPTMIGDFLGERDEFPIEVMHAYVDSLNFERLNFADAIRFLLQGFKLPGEAQKIDRIMEKFAERYCKCNASAFTSADTLYVLAYSVIMLNTDAHNSTVKDKMSKSDFIRNNRGIDNGKDLPDEYLSSLYDQIVKNEIKMNTDDTSAAQSKQSNSINKLLGLDNILSLVNWKQTEEKALGASEMLIKHIQEQFKGKSGKLEPMFHSVADIAILRFMMEICWAPMMAAFSVMLDKSEDRAATSQSLLGFRYAVHVTSVMHMHTQRDAYVTSVAKFTYLHCAADMKQKNVDAVKAIMSIAIEDGNHLQEAWEHVLTCLSRFEHLLLLSEGAPPDASFFSVSNDKQSPRPSSLASNLKKKKKKEGNALQNPGVMAAARGGSYDSSSAGQHSIPGLVSSEQINTFISSIHLLDQIGSFELNHIFTHSQSLNGDAVVAFVRALCKVSMAELQSPADPRVFGLTKLVEIAHYNMNRIRLVWSRIWSVLSEFFVSVVGLSENLSVAFFVMDSLRQLAMKFMEREELANYNFQNEFLRPFVVVMQNSPSSEIRELIVRCVSQLVLSRVANVKSGWRSVLQVFSIAAADERKNIALLAFGTVERIIRDYFSHIITESETAVFADCVSCLAAFTNSSLSAIACLRFCAVKLSQAALPEGFWLPLLSGLSKIASDPRAAARKEALEALFRILKDHGHLFSAAFWSRAFDSAIHPILKQLQAHHRCSDGDDEPPSHSEIRASAALRTADLLITFLDAVRPQLLPAVDLLSAFVRSPRRQSSNAGLAALLLLTERCGRDLSGTEWTHLLSAIGTSASSSFRVASELASILSHVELPDYSDAAGDSSDLESADENADAEKALAAVAILKDHMSVLLSIVEAVRRLHATNRKVLLGPHVSILLGVLSSAVSHAGELSSRAGLRSKMESVCYLLEISEPPVVHFENECHRSYLAVLKKVHEEDDGDPSAVSMIISECEEMLGIYLDCAGFRSPELQKRLPLASSAKEELSARSPLAVLALRALSELDDATFHQNLGLLFPLLVSLIRCPHGSPEVSRALHCIFQSAVGSILSGL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18442	ARFGEF, BIG	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	Biological Process	regulation of ARF protein signal transduction
GO:0005086	Molecular Function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.870
SRP064423	SRR2545915	Juvenile tuber	6.750
SRP108465	SRR5643513	five period of Gastrodia elata	8.760
	SRR5643514	five period of Gastrodia elata	9.210
	SRR5643515	five period of Gastrodia elata	10.440
	SRR5643524	five period of Gastrodia elata	9.800
	SRR5643525	five period of Gastrodia elata	13.550
	SRR5643528	five period of Gastrodia elata	11.530
	SRR5643658	five period of Gastrodia elata	13.660
	SRR5643659	five period of Gastrodia elata	14.040
	SRR5643660	five period of Gastrodia elata	14.680
	SRR5643661	five period of Gastrodia elata	12.360
	SRR5643662	five period of Gastrodia elata	12.430
	SRR5643663	five period of Gastrodia elata	13.110
	SRR5643664	five period of Gastrodia elata	13.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.170
SRP279888	Gastro	Gastrodia elata tuber	10.69
	Juven	Juvenile tuber	14.05
	Mother_Gastro	Mother tuber of Gastrodia elata	11.06
	Mother_Juven	Mother tuber of Juvenile	10.71