Detail information of GWHGAAEX011519/evm.TU.scaffold_38.92


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|2.00E-14RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01494.00E-76Predicted RNA-binding protein SEB4 (RRM superfamily)
nrgi|672119193|ref|XP_008782828.1|1.15E-107PREDICTED: RNA-binding protein 38-like [Phoenix dactylifera]
Swissprottr|Q9SHZ6|UBA1A_ARATH3.00E-19UBP1-associated proteins 1A
trEMBLtr|W1PUM8|W1PUM8_AMBTC5.00E-98Uncharacterized protein {ECO:0000313|EMBL:ERN11539.1}
TAIRAT1G764604.00E-76RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004125372082560287-
Transcript Sequence

Network for GWHGAAEX011519

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_139975.00E-16
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.260
SRR2545915Juvenile tuber14.780
SRP108465SRR5643513five period of Gastrodia elata13.330
SRR5643514five period of Gastrodia elata14.450
SRR5643515five period of Gastrodia elata13.300
SRR5643524five period of Gastrodia elata13.010
SRR5643525five period of Gastrodia elata21.750
SRR5643528five period of Gastrodia elata19.720
SRR5643658five period of Gastrodia elata28.620
SRR5643659five period of Gastrodia elata15.780
SRR5643660five period of Gastrodia elata13.780
SRR5643661five period of Gastrodia elata12.400
SRR5643662five period of Gastrodia elata17.630
SRR5643663five period of Gastrodia elata16.580
SRR5643664five period of Gastrodia elata15.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.340
SRR6049655Rhizomagastrodiae_C368-T10_good_118.680
SRR6049656Rhizomagastrodiae_C368-T07_good_115.400
SRR6049657Rhizomagastrodiae_C368-T07_good_117.220
SRR6049658Rhizomagastrodiae_C368-T04_good_119.910
SRR6049659Rhizomagastrodiae_C368-T04_good_123.140
SRR6049660Rhizomagastrodiae_C368-T01_good_117.340
SRR6049661Rhizomagastrodiae_C368-T04_good_117.440
SRR6049662Rhizomagastrodiae_C368-T01_good_111.780
SRR6049663Rhizomagastrodiae_C368-T01_good_115.870
SRR6049664Rhizomagastrodiae_C368-T10_good_116.600
SRR6049665Rhizomagastrodiae_C368-T10_good_116.600
SRP279888GastroGastrodia elata tuber 18.68
JuvenJuvenile tuber17.10
Mother_GastroMother tuber of Gastrodia elata 22.77
Mother_JuvenMother tuber of Juvenile 27.36