Gene detail

Detail information of GWHGAAEX011521/evm.TU.scaffold_38.94

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694525\|ref\|YP_008797579.1\|	3.00E-132	DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0262	0	RNA polymerase I, large subunit
nr	gi\|672158081\|ref\|XP_008798769.1\|	0	PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Phoenix dactylifera]
Swissprot	tr\|P18616\|NRPB1_ARATH	3.00E-97	DNA-directed RNA polymerase II subunit 1
trEMBL	tr\|A0A088S695\|A0A088S695_COCNU	0	Putative RNA polymerase AI large subunit {ECO:0000313\|EMBL:AIO05696.1} (Fragment)
TAIR	AT3G57660	0	nuclear RNA polymerase A1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	2599990	2659851	+

Transcript Sequence
>GWHTAAEX011521 TTGGGTCTGCCGCTGGGATTCATCTTCTCAGGCGATTCGTTCAAGCCTTGCAGACCACTGGTTTACTAAGCTAAACAAATAAACCGTAACCTTTGCAGGCGTCCACTTTATATGCAATCTATGTTCCAAATTTATTATTAAATCTAAGCATAGCTTGCTTTGTCAAGATAAAATACGATTTATAGTATGCTCCGCCCCCGCATAAACCCTAGCATAATACTCAGAATTGGCGAGATTAACACACTTTGATCCACTTTGAAGATGTCTGACGCTCGTTTGCGACCTGATGAGGCGGCATCAGACACCGTGGATTTGATCAAGTTCAGCTTTTATTCAGCGGAAGAAGTTCGGAAGATAAGCGTCAAGGCAATCACTAGGGCCGAACTCCTCGATTCTAAACAATCGCCTGTTCCAGATGGATTGTATGATCCAGCATTGGGCCCGGTCAATGAGCTTGATACGTGCAAAACTTGTGGACAACAAGTTGCATATTGCATGGGTCACTATGGCCATATTGAGCTTGCGAGACCACTTTACAATCCACTGTTGTTCCATACTCTTAAAAAAATTCTTCAAATTGCTTGCGTTTATTGCCATAAATTTAGGATGGGTTCAGTCAAGGTTTCCAAATATGTGTCCATCCTGAATTTAATCGGTGAAGGCAATATAATTGCAGCAAAAAAATTGGCTACTAACTTCTTGCATGAGGCAATTTTTGGCCCAGGAGAGGCAAATTTGCACGTTAATTCACATCCAGGTGCAAATTGTCCGGTTGGTGGGTGGACTTCTATTCAACAGGCAGAAGCTGCTTCTGTTCTTTTAGAAATTATGCGAGAACAGCCTAAAAAGTGTAACTACTGCGATAGAAGCTGTCCAAAAATTGGGAGCCTCACATTTGGTTGGCTAGAAATGTCTCTCCACAATTCTCGGGTAAGAGCCAACTTTATTGAAGATTCTAGTTTTGAATTTTCGTCAAAGGGTGGGATGGAGCGTAACATTGGTAGCAATGAAAAATGGGTGGATAATAATGAAGTTCTGCAGTCAAAGAGTTCAGGAAGTGCTTCAGAGGGTGATGGAGAATTGTTGGAGCCTGAAAAAAATACAAAGGGGACTGAGCTTGAAAGAGGACTGCCTCCTGAATATTTAAAGCAGATTGCATCATGTGAAAATATTGATCTTCCTCCTTCAAAGGCTGAAGGTATTTTAAAAAATTTATGGAAAAGGGAATCAGAGTTATGCATGCTCATTTGTGACATTCAGTGCCGAAGTAGAAATTTAAGGAATTTTTTAAGGGAGAAGGGGCATGCTATGTTTTTTTTGAAAGCTCTTCTTGTTCCCCCAAACAAGTTTCGACCAGTTGCATGTGGCATGAAGGAGTTGTTGGAGCACCCTCAAAATATTTTATATACCAGAGTGGTGACTTCAAACATTTTACTTAGCGCTGAAGTCAATGATCAAGATATCATGCGAAAGTGGCGGTCTCTACAATATAATGTAAATGTGCTGTTTGATAATTCCAAGGCTTTTGGCAGAAATGATGAAAACTTATCTGGCTTCCGCCAGATATTAGACAAGAAGGAAGGCCTTTTTCGACAAAAAATGATGGGAAAGAGGGTTAACTTTGCTTGTCGATCTGTCATATCTCCGGATCCATACCTTGCCGTCAATGAAATTGGCATTCCTCCGTATTTTGCTCTGAGGCTGACATATCCTGAGAGAGTGACCCCCTGGAATGTAAATAAGCTGAGACAAGCTGTTGTGAATGGTTCTGATTGTTATCCTGGAGCAACACATTACATGGAGAGGGAGAAGTTCTACACATTGCAAGCAGGCATGAACATGCGAAGTGCTATTGCAAGAAAATTACCTATATCAGGAGCATTTGCTAAGATGGGAATCGAGCCAGAAACTAAATTTGAAGGGAAGTTTGTGTACCGTCATTTACAAGATGGAGATGTTGTACTGGTTAATCGACAGCCAACTCTTCACAAGCCTGGTATGATGGCTCATATTGTTCGGGTAATGAATGGAGAAAAGACAATTCGTATGCACTATGCCAATTGCAGTACTTACAATGCTGATTTTGACGGGGATGAAATGAATGTTCATGTCCCCCAAGATGAGATTTCACGAGCTGAATCAGTTCACATTGTTAATGCCAATAAGCAGTATATTGTTTCAACCAGTGGGGTTCCAATAAGAAGTTTGATACAGGATCACATTGTGAGTGCTGTACTCTTAACAAAGAGGGATACATTTCTAACACGTGAAGAATATCATCAGCTTTTATATGCTTCTTGTGTACCTCCTCCATCTTATAGTTGTCAAGCTGCTAAATTTGGCCAAAAAATTTCTGTTTTAGCTGATGTTGAGGAGATTCAATGTTTTTCTCCTGCCATTTTGAAGCCTAAACAGCTGTGGACAGGAAAGCAGGTTATCACAGCAATTCTACACTATATTACAAAAGGTCGTTTACCACTTAGTGTCAGCAAAGAGGGAAAAGTCCCCAGGGAGTATTTTGGAAAAGATGCAACTGAAAGAAGTTTGTTTGTTTACAACAATGAGCTTGTGCATGGGATTATTGACAAAGCTCAGTTTGGAAAATGTGGTTTAGTTCATACTGTCCATGAACTCTATGGAGCAGAGACTGCTGGGCAACTGCTTGCTGTGTTCAGTCGCCTATTCACTTTGTTTTTGCAGATGCATGGTTTCACTTGTGGAGTGGATGATCTTTTGCTTCTTCAAAAATCGGATATGAAGAGAAAAAGAATATTGGAAAACAGTGAAGAACGTAGTGAAGACGTTCATTCCCGGTTTACTGCATCAGCAGCGGATAGTTTGGAAGATTCATTGAAGCTGCTTAAAGAGACTGAAAAAGTTGTCAGGAGAAATGGAGAATCTGCAACAACAAGGCTGGATAGGATGATGTCAAATACTTTGAATGCTCTTACTTCTGAAGTTAATAAGGTGCTATTTCCTCGTGGCTTGCAGAAGTCATTCCCAAAAAACTGCCTTTCTCTGATGACATCTACTGGTGCAAAGGGTGGCTTGGTTAATATGACACAAATTTCATCGTTATTAGGTCAGCAAGAGCTAGAAGGAAAACGGGTTCCACGCATGGCTTCTGGGAAAACTTTACCTTGTTTTCCTGCATGGGATATCTCTTCTCGAGCTGGAGGCTTTATTAGTGATCGCTTTTTGACTGGCTTGCGCCCTCAAGAGTACTATTTTCACTGCATGGCCGGTCGTGAGGGATTGGTGGATACAGCTGTCAAAACATCTCGTAGTGGATATCTCCAGCGCTGTTTGGTGAAAAATCTCGAATGCTTAAAAGTTTGCTATGATCATACGGTGCGTGATGCGGATGGATCCGTCATCCAATTCACGTATGGTGAAGATGGAGTCGACGTCCAGAAAAGCAGTTTTCTGGGCGAGTTTGAAATTCTTGCGATGAATCACAAAGTTCTTGAAAAGATGAGCAGCCAACTTGAATATGATCATTTATCAAAATCAAACAGCTACTTGAAAGAATTGCCCAGCGAGCTCAATGAAAAGGCCGTTCAATATCTTACCCAACTCTCTAAGAGTTCAAACGGTTATGTTAATAACAATAATAAGCTTAAGAGAAAAGATCTGCTGAAGTTGGTGAAATTCAAGTACCTCTCAAGCCTTGCTGAACCCGGTGAGGCGGTAGGCGTGCTTGCTGGCCAGTCGATTGGGGAACCATCGACGCAGATGACGCTCAACACATTCCACCTTGCCGGGCGCGGAGAGATGAATGTGACCCTTGGCATCCCGCGTTTGGTCGAAATATTGATGCATGCAAAGGCGGAAATCCTAACGCCTATCATGACCTGCCCTTTACTTGACTGGCGAACAAGGGATGATGCTGAATTTGTTGCTGCTAAACTGGGGCGGGTCTCTTTGGCAGATGTTATAGAGACTATGAATGTCTCCATCGCCCCTTTTTCTGCTATTGGAAAGCAGGCGTGGACCGTATATAAGTTGACTCTTAAAGTTTACTCAACTGAACTCTTTCCTCCACATTCGGGCATTACCTTGGAACTCTGCATGGACACCATACAATCAAAATTTGTTAAAATGATTGCGGAAGACGTGCACAAGCACATGACTTTCTTGTCTACGATTAATTGCATACAAATGAGATCATCAAGGTTGGATGACGGGGCCGATGGCCAATCTGGAATGACAAATAATAAAGACAATGCTGATGGTGCTGATGACACTGATGGCCGTAACGATGGGGATAAGCATGATGACGATGATGAAGATGTGAAAGCGGAAGACGATTTGGGTGCCGATGCCGAGAAGGGTAAGCGCCAGGTCAATGATGAGATCGAATATGATGACGATTGTGATGTTGAAAACGAAGAGTCGGGTTTGGATGATGAGCATGAATATGAGCATGAGCATGGTGGTGCGCAGTCGGAATCTGAAATTGAGAATGAATTTATTAAGGGTGAAGAAGATGGTGAAATTGAAGGTCAGGATCCTCCAGTGGAGGAGGCAGTTGTTGAACCTACGCCGTCAAAAGTTGCAGTAGGCAAGAAGGAAGTGAAGCCCAAAGCCGAGGGAAAGAAGGCCGGAAAAAAGCTTGGGAAAGGGAGCGAAAGAATTGTTCTGGCGGAGCCAAAGGGGCAGGAATTCCATGTTCATTTAAAGTTTTATCAAGATGAGCCGCATATACTTCTGGCCGGGATTGCGCAGAGGGCGGCGAAGCGTGTGTACGTGAAGGCGTGCAAGAACATCGACCGGGTTACGGTGGTGGAGCCAAAGCGGCGCGGCGATCCCCTCTTGCTGCAGACGGCGGGAGTGAACTTCAGCGTGCTGTGGGGATTGAACGAGTATGTCGACATCGATCGAATGACGACGAACAACATTCAGGCGATGCTGGCTGTGTACGGCGTGGAGGCGGCCAGAGCCACCATCTTGAATGAGGTGAAGGCGGTTTTCGGCGCGTATGGCATCCAGGTGAACATCCGGCACTTGATGCTCATCGCGGATCTGATGACGTGCAACGGCGATTACCGCCCACTGAACCGCACTGGGATGCGGAAATTCAGCACATCCCCTTTTTGCAGAATGTCCTTCGAGATGGCGACCACGACGATCGCTGAGTCTGCCCTGCACGGCTTCGCAGACACCCTGGATTCCCCCTCTGCCTGTATCTCCCTCGGGAAGATCGTGAAGATGGGCACAGGTGTATTTGATCTCCTGCAGAACTTGAAGTTGTGATTCATTCATTAAGATTTGTTGGGGAAGTCAATGTGCTTGTTTGTTATAATCAGTGAAATTTTGACTTTGATTTTTTTTTTAGTTGTATCTTTGTTATATATTTATCAGTGCACGAGTAATTTAAGGCCTTCAACTTGGTTATAGATTTGAAGGCACCATGAAGGGACTAACTTCATTGATCTGCTTCACACAGGTCAAAAAATATGGTAGCCGCCCGGCATGAAATGCGGTGACATCCACCTTTTTGGGCCTTAAGGTTTGTAGCAGAAAGAAGTCTAGAATTTCAAATTTCATGTAAGTAAAAATGTTTAGATATTGCTAGAAATTTCTCAAGTTTGAAAAATTTCTGATGCATTTTAATAGTTTTAGAAAATTCTTAAGAGTATTGTTAAACTCGCACTAAAATATATAAATGATG

Network for GWHGAAEX011521

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04997.11	RNA_pol_Rpb1_1	15	446	1.50E-33
PF00623.19	RNA_pol_Rpb1_2	449	632	2.50E-60
PF04983.17	RNA_pol_Rpb1_3	637	824	9.20E-32
PF05000.16	RNA_pol_Rpb1_4	870	975	9.50E-20
PF04998.16	RNA_pol_Rpb1_5	982	1610	1.70E-88

Protein Sequence

>GWHPAAEX011521
MSDARLRPDEAASDTVDLIKFSFYSAEEVRKISVKAITRAELLDSKQSPVPDGLYDPALGPVNELDTCKTCGQQVAYCMGHYGHIELARPLYNPLLFHTLKKILQIACVYCHKFRMGSVKVSKYVSILNLIGEGNIIAAKKLATNFLHEAIFGPGEANLHVNSHPGANCPVGGWTSIQQAEAASVLLEIMREQPKKCNYCDRSCPKIGSLTFGWLEMSLHNSRVRANFIEDSSFEFSSKGGMERNIGSNEKWVDNNEVLQSKSSGSASEGDGELLEPEKNTKGTELERGLPPEYLKQIASCENIDLPPSKAEGILKNLWKRESELCMLICDIQCRSRNLRNFLREKGHAMFFLKALLVPPNKFRPVACGMKELLEHPQNILYTRVVTSNILLSAEVNDQDIMRKWRSLQYNVNVLFDNSKAFGRNDENLSGFRQILDKKEGLFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLRQAVVNGSDCYPGATHYMEREKFYTLQAGMNMRSAIARKLPISGAFAKMGIEPETKFEGKFVYRHLQDGDVVLVNRQPTLHKPGMMAHIVRVMNGEKTIRMHYANCSTYNADFDGDEMNVHVPQDEISRAESVHIVNANKQYIVSTSGVPIRSLIQDHIVSAVLLTKRDTFLTREEYHQLLYASCVPPPSYSCQAAKFGQKISVLADVEEIQCFSPAILKPKQLWTGKQVITAILHYITKGRLPLSVSKEGKVPREYFGKDATERSLFVYNNELVHGIIDKAQFGKCGLVHTVHELYGAETAGQLLAVFSRLFTLFLQMHGFTCGVDDLLLLQKSDMKRKRILENSEERSEDVHSRFTASAADSLEDSLKLLKETEKVVRRNGESATTRLDRMMSNTLNALTSEVNKVLFPRGLQKSFPKNCLSLMTSTGAKGGLVNMTQISSLLGQQELEGKRVPRMASGKTLPCFPAWDISSRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLECLKVCYDHTVRDADGSVIQFTYGEDGVDVQKSSFLGEFEILAMNHKVLEKMSSQLEYDHLSKSNSYLKELPSELNEKAVQYLTQLSKSSNGYVNNNNKLKRKDLLKLVKFKYLSSLAEPGEAVGVLAGQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLVEILMHAKAEILTPIMTCPLLDWRTRDDAEFVAAKLGRVSLADVIETMNVSIAPFSAIGKQAWTVYKLTLKVYSTELFPPHSGITLELCMDTIQSKFVKMIAEDVHKHMTFLSTINCIQMRSSRLDDGADGQSGMTNNKDNADGADDTDGRNDGDKHDDDDEDVKAEDDLGADAEKGKRQVNDEIEYDDDCDVENEESGLDDEHEYEHEHGGAQSESEIENEFIKGEEDGEIEGQDPPVEEAVVEPTPSKVAVGKKEVKPKAEGKKAGKKLGKGSERIVLAEPKGQEFHVHLKFYQDEPHILLAGIAQRAAKRVYVKACKNIDRVTVVEPKRRGDPLLLQTAGVNFSVLWGLNEYVDIDRMTTNNIQAMLAVYGVEAARATILNEVKAVFGAYGIQVNIRHLMLIADLMTCNGDYRPLNRTGMRKFSTSPFCRMSFEMATTTIAESALHGFADTLDSPSACISLGKIVKMGTGVFDLLQNLKL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02999	RPA1, POLR1A	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.760
SRP064423	SRR2545915	Juvenile tuber	21.690
SRP108465	SRR5643513	five period of Gastrodia elata	17.630
	SRR5643514	five period of Gastrodia elata	19.180
	SRR5643515	five period of Gastrodia elata	16.160
	SRR5643524	five period of Gastrodia elata	17.110
	SRR5643525	five period of Gastrodia elata	15.600
	SRR5643528	five period of Gastrodia elata	12.140
	SRR5643658	five period of Gastrodia elata	12.950
	SRR5643659	five period of Gastrodia elata	18.960
	SRR5643660	five period of Gastrodia elata	23.070
	SRR5643661	five period of Gastrodia elata	23.430
	SRR5643662	five period of Gastrodia elata	22.050
	SRR5643663	five period of Gastrodia elata	21.170
	SRR5643664	five period of Gastrodia elata	23.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.620
SRP279888	Gastro	Gastrodia elata tuber	20.46
	Juven	Juvenile tuber	34.39
	Mother_Gastro	Mother tuber of Gastrodia elata	10.66
	Mother_Juven	Mother tuber of Juvenile	20.05