Detail information of GWHGAAEX011524/evm.TU.scaffold_38.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284030326|ref|YP_003380257.1| | 3.00E-109 | protease-associated PA domain-containing protein [Kribbella flavida DSM 17836] |
| nr | gi|743810736|ref|XP_010928976.1| | 0 | PREDICTED: subtilisin-like protease SBT3.5 [Elaeis guineensis] |
| Swissprot | tr|Q9ZSP5|AIR3_ARATH | 0 | Subtilisin-like protease SBT5.3 (Precursor) |
| trEMBL | tr|M0S3Q3|M0S3Q3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P27960_001} |
| TAIR | AT4G10520 | 0 | Subtilase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 2748356 | 2753245 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011524
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 28 | 108 | 3.40E-15 |
| PF00082.21 | Peptidase_S8 | 135 | 607 | 2.20E-50 |
| PF02225.21 | PA | 400 | 470 | 4.80E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.410 |
| SRR2545915 | Juvenile tuber | 8.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.390 |
| SRR5643514 | five period of Gastrodia elata | 8.330 | |
| SRR5643515 | five period of Gastrodia elata | 5.120 | |
| SRR5643524 | five period of Gastrodia elata | 7.200 | |
| SRR5643525 | five period of Gastrodia elata | 66.550 | |
| SRR5643528 | five period of Gastrodia elata | 82.390 | |
| SRR5643658 | five period of Gastrodia elata | 58.750 | |
| SRR5643659 | five period of Gastrodia elata | 4.350 | |
| SRR5643660 | five period of Gastrodia elata | 3.880 | |
| SRR5643661 | five period of Gastrodia elata | 2.610 | |
| SRR5643662 | five period of Gastrodia elata | 3.000 | |
| SRR5643663 | five period of Gastrodia elata | 2.910 | |
| SRR5643664 | five period of Gastrodia elata | 2.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.44 |
| Juven | Juvenile tuber | 4.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.72 | |
| Mother_Juven | Mother tuber of Juvenile | 2.19 |