Gene detail

Detail information of GWHGAAEX011531/evm.TU.scaffold_38.107

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|161089460\|gb\|ABX57720.1\|	0	sesquiterpene synthase [Vanda hybrid cultivar]
Swissprot	tr\|B1B1U3\|ZSS1_ZINZE	6.00E-134	Alpha-humulene synthase
trEMBL	tr\|A9YCD2\|A9YCD2_9ASPA	0	Sesquiterpene synthase {ECO:0000313\|EMBL:ABX57720.1}
TAIR	AT5G23960	4.00E-77	terpene synthase 21

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	2950080	2952623	-

Transcript Sequence
>GWHTAAEX011531 ATGGAGGCTCTTGAGGCATCTCTTACCCCCTCATATGGGCCAGTTCGCATGACAGGAGATTATCACCCAACTGTTTGGGGTGATTACTTCCTTTCTAGAAATCCTATTCCGCAGCATAAACTGGAGTCACTAATGCCTAGAAAGAATGAGCTCAAGGAAGAGATACTGAGAATGTTCAAAGAAACCACTGATTCCTTGCAAATAATGGAGCTTATAGATTTGATTCAGCAACTTGGAGTGTGCTATCAATTTGAAAATGAAATCTCTAAAGCATTATGCACTATTCAGAAGGCTTCTGTATGCGATTATGAAAATTATTTAAATGCAGTTGCTCTTCGTTTTCGGCTATTAAGGCAGAACAGAATCTATGTTCATGTTGACGTATTTGACAAATTTTTGGACGAGAAAGGAGACTTCAAGGAAAGCCTAAGCATTGATGCAAAAGCTTTGTTGAGCTTATATGAAGCCGCACACATGGCAATGCCCAATGAGGATGTGATGGACAAAGCACTCGAGTTCTCCAAGACAAATTTGGAAGCAATGCAATGTAATCTTGACCCATATTTGGCTGAGATGGTTTCGGCTTCTTTAGATGTACCACTTTTGCGAAGAACCAATAGGCTCAAAGCTAGAATATGGTGGAAAAACTTGGAAATGTCAAAAAGAGTTTGGTTCTCACGCGATCGATTAGTAGAGTGCTTTTTCTGGGTACTTGCAACTTATTTCGAGCCATGCTATTCACGTGGTAGAGTGATGATGATAAAAGTGATAACACAAATGTCAATTATGGATGATATCTATGATAATTTTGGGACGATTGAGGAGCTTAATTTGCTCACCAAGGCAGTAAATGGGTTGGAAATTGAAAGTATCTCTAAACTGCCCGAAAGCTTACAATACTCTTATCACTTACTTTTGGATGTCTTTGAAGAATGTACTACCTTGCTCAAGCCAGAGCAGAACTCATTTCGCATGGAATATATTGTATATGAGTTTAAAAAGGTTCTAAATGCATATCATCAAGAATCCATCTGGAGTAATAAAGGCTATGTGCCTAATCTTGAGGAGCATATGAGTGTTACTCTACTTACTGCTGGGTACTCATTTCTTGCATGTTCTGCTTATATCGGTATGCATGAGAAAATCCCAAAAGAAGTATTTGAGTGGGCTATTAGCCTCCCTGAGATTATAAAACAATCTTGTGTTATAGGAAGGGTTATGAATGATATTGTCTCTTATGAGCGTGAACAAGAGAGAACTCATATCGCTTCAACAGTTCATTGCTATGTAAAGGAACATGAATGTTCTGAGGAAGAAGCATGCAAGAAGCTATTAGAGATGACCAAGAATGCCTGGAAAATTATAAATAAAGAGCTAATCATGCATGTGAAGATCCCATATTTTTTGGTTTCACCAATAATTAACCTTGCACGATATAATGATTATGTTTACCATGGAAAAGATATATACACACATGCAGATGAGTTCATGAAAGCGAGAATTCATGACATCTTAGTTGAGCCTATTCAAATAAGCATGAGAAAGGAATAA

Network for GWHGAAEX011531

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.20	Terpene_synth	25	197	1.80E-43
PF03936.15	Terpene_synth_C	212	453	8.00E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15803	GERD	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0010333	Molecular Function	terpene synthase activity
GO:0016829	Molecular Function	lyase activity
GO:0000287	Molecular Function	magnesium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.900
SRP064423	SRR2545915	Juvenile tuber	6.870
SRP108465	SRR5643513	five period of Gastrodia elata	1.160
	SRR5643514	five period of Gastrodia elata	0.040
	SRR5643515	five period of Gastrodia elata	0.050
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	78.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	77.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	102.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	221.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.220
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	1.31
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.09