Detail information of GWHGAAEX011532/evm.TU.scaffold_38.110
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|51893978|ref|YP_076669.1| | 3.00E-08 | glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM 14863] |
| KOG | KOG0144 | 6.00E-118 | RNA-binding protein CUGBP1/BRUNO (RRM superfamily) |
| nr | gi|672130575|ref|XP_008788821.1| | 0 | PREDICTED: flowering time control protein FCA-like [Phoenix dactylifera] |
| Swissprot | tr|O04425|FCA_ARATH | 2.00E-118 | Flowering time control protein FCA |
| trEMBL | tr|M0RYJ9|M0RYJ9_MUSAM | 6.00E-167 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P09900_001} |
| TAIR | AT4G16280 | 6.00E-118 | RNA binding;abscisic acid binding |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 3242481 | 3334236 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011532
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 10 | 76 | 6.30E-16 |
| PF00076.21 | RRM_1 | 101 | 165 | 2.00E-14 |
| PF00397.25 | WW | 509 | 535 | 2.40E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.650 |
| SRR2545915 | Juvenile tuber | 22.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.920 |
| SRR5643514 | five period of Gastrodia elata | 20.310 | |
| SRR5643515 | five period of Gastrodia elata | 18.240 | |
| SRR5643524 | five period of Gastrodia elata | 20.510 | |
| SRR5643525 | five period of Gastrodia elata | 15.480 | |
| SRR5643528 | five period of Gastrodia elata | 14.710 | |
| SRR5643658 | five period of Gastrodia elata | 17.800 | |
| SRR5643659 | five period of Gastrodia elata | 18.390 | |
| SRR5643660 | five period of Gastrodia elata | 19.930 | |
| SRR5643661 | five period of Gastrodia elata | 19.250 | |
| SRR5643662 | five period of Gastrodia elata | 20.180 | |
| SRR5643663 | five period of Gastrodia elata | 20.760 | |
| SRR5643664 | five period of Gastrodia elata | 19.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.40 |
| Juven | Juvenile tuber | 23.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.30 | |
| Mother_Juven | Mother tuber of Juvenile | 14.67 |