Gene detail

Detail information of GWHGAAEX011534/evm.TU.scaffold_38.112

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|194336180\|ref\|YP_002017974.1\|	2.00E-27	serine/threonine protein kinase [Pelodictyon phaeoclathratiforme BU-1]
KOG	KOG1187	3.00E-144	Serine/threonine protein kinase
nr	gi\|695003369\|ref\|XP_009385133.1\|	0	PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9ASQ5\|CRCK3_ARATH	1.00E-157	Calmodulin-binding receptor-like cytoplasmic kinase 3 (Precursor)
trEMBL	tr\|M0S5B2\|M0S5B2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P05210_001}
TAIR	AT2G11520	3.00E-144	calmodulin-binding receptor-like cytoplasmic kinase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	3335299	3347480	+

Transcript Sequence
>GWHTAAEX011534 AGTGGGTCATGGAGGCTTGGGCTCGGGCCAAGTCAGTTTAGGCCATCCCTTACCTAATATTTAACCGGGTCGGGCCGGGCCGGGCCAGTGCCCAGGTCTAGTCTCCCCGTTTAGCAGGGCCGCAGGGCTAAGCTCATTGTGACGACTGATGAGCATCAGGTTTACCGTTAAGCCGCCGGTTTACCGGTTACTTGGTTCCAGCTCGGCTCATTCTCGGTCGACTCAGGGTCCTCTGCCTTGTCCTCCGCTCGCATTTTTTACTACATCGATTCAGGATTTGGATCTTCTGACACTTGTAAGTTCCGAGACCTCGCGCGCTCCAATTCGAGCTCGATATGCGATTGCCCGCTGGTTTTGGCTGTGCTCGGATCCTGCGCTGATGGCGTTGATCCTTTCTTTCTTGCTGCTTGTCGCATCGCTGTTCGCGGAGGCTGCGGTTGGTAAATCGGTGGCAGGTGCTTCGAGAATCTGTGGCTCTGATCGCGTTGGGTATCTGAGATTGCAAGATGGATGCAGGGTTTTTGTGAACGGGAAAAGAATTGATGATCGGGATTTGGCGTGCCGGGCGTTAGCGTTTTACCTCGCGAATAAGTGCTTGGAGTTTGATTCCCGGGTAGAGTGGGCAGAGCTTGGTAGAAAATGCTGCTTTCGGGAGCTCAACCGTGATGCTCTTTCCGGGGAAGCACTTCATGTGGCAGGGAGAAAACTTCTGCTGCCTCCGGAGGATTCCTCTAAATTGGACCCCCAGTCAAAGGAGGAAGCTACTGATCTTAGGCTAATTATTCCACCAAAAAAAAAAATTCTAGCTGTACAAGGAATGCTTCTTTTATGCTGTGTTGTTATATGTCCTTGCTTTCGTGCAAGAAAGAAAGAACCAATTGAACAAAATTCTCTGACCAAGGAACCGAATTCATCAGATTTAGTTTCTCCTTTAGATGGACCTAATTCGCCGTACAAAAATCCAGCAACTCCCCATAAAGTGCCTCAAAGCCCCTCTCGGTTTTCATTATCTCCACAGCAAAATAGAATTGGATCTTTGCAATTAACTATCAATCAAATCATCAAAGCCACTCAAAACTTTTCACCTTCACTGAAGCTAGGCGAAGGTGGATTTGGTACTGTTTACAAAGGTTTTCTTGGTGATGGTCAGGTTGTAGCAGTAAAACGAGCGAAGAAGGAACATTTTGCTACTCTTCAAGATGAGTTCATCAGTGAAGTAGAACTACTTGCAAAGATTGAACACCGGAGTTTAGTGAGATTGCTTGGTTACACGGAGAAAGGAAATGAGCGTATTATTGTGACAGAGTATGTACCAAATGGTACACTCAGAGAACATCTTGACGGTTTGCTTGGCCATATTTTGGATTTTAATCAAAGACTGGAAATAGCAATTGATGTTGCGCATGCCTTGACATATCTTCATCTATATGCAGAAAAGACGATAATCCACAGAGATGTGAAAGCGTCGAACATCCTTCTAACCGAGAGCTTTAGAGCGAAGGTGTCGGACTTCGGGTTTGCGCGAACCGGTCCCACAGAGGCGGGGCAGACTCACATTTCTACCAAAGTAAAAGGAACGGCCGGCTACCTCGACCCCGAATATCTCCGCACCTATCAGCTGACGCCGAAGAGCGATGTCTTCTCGTTTGGCATTCTGCTCATCGAAATCCTTTCCGCCCGGCGCCCGGTCGAAATGAAGAGAGGCATTGAAGAAAGGATCACCGTCCGATGGGCGTTTAAGAAATTCAATGAAGGGAATATCAGAGAGGCTTTGGATCCAAAATTGCAGGAAGATGTGAACTTGGAAGTTGTTGCAAAAATGCTCAGTTTGGCCTTCCATTGTGCAGCGCCGACTCGCGCCAATCGGCCTTTCATGAAAGAAGTTGGGGAGCAACTTTGGGAAATAAGAAAGGACTTTGGGAGGAGTCTTAGGACCGAGTAAACAATTTTTTTTTTTGTTTAATCTTTATGTAAAACAAAAAAAAGAATTAAACCCTGATAGTGTTAAAGGAAAACATGGTTTAGTAGATCTATTAGTGTTAATTGATTTGAACCTTAATATATTATATATATACATATATATTTCTCAACTAGTTTACTGAGATTATGTGAGTTCTTTTAATTGCATCAAAGGATGTTTTCTTTTTTTTTTTATTGTGTATAAGCAAGAATAAGAAATGGGAATTTAGCTGTGTTTCTTACATGTAAAGGTGTGTATATACATAGGAACAGAG

Network for GWHGAAEX011534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	316	583	3.90E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.240
SRP064423	SRR2545915	Juvenile tuber	73.200
SRP108465	SRR5643513	five period of Gastrodia elata	37.210
	SRR5643514	five period of Gastrodia elata	34.370
	SRR5643515	five period of Gastrodia elata	41.770
	SRR5643524	five period of Gastrodia elata	36.040
	SRR5643525	five period of Gastrodia elata	50.480
	SRR5643528	five period of Gastrodia elata	62.750
	SRR5643658	five period of Gastrodia elata	55.290
	SRR5643659	five period of Gastrodia elata	68.170
	SRR5643660	five period of Gastrodia elata	76.410
	SRR5643661	five period of Gastrodia elata	75.960
	SRR5643662	five period of Gastrodia elata	54.850
	SRR5643663	five period of Gastrodia elata	52.880
	SRR5643664	five period of Gastrodia elata	52.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	61.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	59.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.780
SRP279888	Gastro	Gastrodia elata tuber	77.51
	Juven	Juvenile tuber	70.92
	Mother_Gastro	Mother tuber of Gastrodia elata	61.45
	Mother_Juven	Mother tuber of Juvenile	49.88