Gene detail

Detail information of GWHGAAEX011535/evm.TU.scaffold_38.113

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|440681967\|ref\|YP_007156762.1\|	3.00E-29	Cl- channel voltage-gated family protein [Anabaena cylindrica PCC 7122]
KOG	KOG0474	0	Cl- channel CLC-7 and related proteins (CLC superfamily)
nr	gi\|743808326\|ref\|XP_010928311.1\|	0	PREDICTED: putative chloride channel-like protein CLC-g [Elaeis guineensis]
Swissprot	tr\|P60300\|CLCG_ARATH	0	Putative chloride channel-like protein CLC-g
trEMBL	tr\|M0T124\|M0T124_MUSAM	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}
TAIR	AT5G33280	0	Voltage-gated chloride channel family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	3348380	3356832	-

Transcript Sequence
>GWHTAAEX011535 AGGCCTCTCTCGTCGTACTTTCCCTCCATCCCTTTCTCGTTCTATCCTCTCCTGGCGATACCGGCCCCGAGCACATCGCCGGCGATGGTGCTGGCGATGGAACCGGCGGAGGATGGCCAAGATAGTCTCAGGGATCCTCTACTAGAGCAACACCATTGTGTGAATCTCCGGCGATACTCCTCCAATAGTTTTTCCCAAGTAGCCATCATTGGATCCAATCCCTGCCCCATAGAAAGCCTCGATTACGAGATAATGGAGAACAACTTCTTTAAGCAGGATTGGAGGGCTCGAGGTCGAACTCATATAATCTGCTACGTGATCCTTAAGTGGACTCTTTGCCTCCTCGTCGGAGTTATCACCGGCGCTGTTGGTTTCTTCATTAACCTCGCCATTGAGAACATTGCTGGCTTTAAGTTTCTTCGCACATCTGACCTTATGGTTGCCAATAAGTATTTGATGGCTTTTGGAGCTTTTGCGAGCTCCAATTTTGTTTTGTTGATGCTGGCTGTGGCAATCACATCATTCCTTGCCCCGGCTGCGGCTGGATCCGGGATTCCGGAACTGAGGGCTTATTTGAATGGTGTTGATGCTTCCGAGATCCTTTCCCCCAACACTCTTGTTGTCAAGATAATCTGCAACATTGCTGCAGTATCATCATCATTACATGTGGGAAAGGCAGGCCCTATGGTGCACATTGGCGCTTGCATTGCAGCTTTATTTGGGCATGAAAAGCTCCATAAGTTTCACTTGACCGGAAAATGGCTGAAATACTTGAAGAATGATAGAGATCGCAGGGATTTTGTGACCTGCGGTGCTGCTGCAGGCGTCGCTGCTGCTTTTCGATCACCAGTTGGCGGTGTTCTATTTGCTCTAGAGTCATTGTCATCCTGGTGGAAAAGTTCTTTGTTGTGGAGGGCATTCTTTACAACGGCTGTAGTTGCAATTGTGCTTCGAGCATTAATCAATGTTTGTATGAGTGGAAAGTGTGGATTGTTTGGGAAGGGCGGGCTTATCATGTTTGATGTTACTTCAACATCAATTGCTTATCACTTGGTGGACTTGCCTCTTGTGATCCTTCTTGGTGTTATAGGTGGTATATTAGGAAGTTTCTACAATTTTCTGATGGAGAAGGTTCTTCGAATCTACATTCGTATCAATGAGAAGGGCATTGGCTATCGGCTACTTCTTGCTGGAACTATTTCCGTATTCATATCCTGCATACTGTTTGGGTTACCATGGCTTACTTCTTGCCAACCTTGTCCAACACAGGAAAGCTGCCAAAGATTGAGCAGAACAAGCAAATTGAAAAATTTCCACTGCCCTCCCAACTACTATAATGATCTAGCTATTCTGCTCTTTAGCACCAATGATGACGGTATTAGAAATTTGTATAGTTCTGGCACTCATGAGCTATTTGATCAGTTCTCAATCATATTGTTCTTTGTAACCTCTTACTTTCTCGGCATCATAAGCTACGGAGTGGTCGCTCCTGCTGGCCTCTTTGTCCCCGTCATTCTGACAGGCGCGATCTACGGACGTTGTGTTGGAATCCTGATGGGCTCGCAGTCATCGTTAGACCATGGCCTCTATGCCGTCCTTGGATCCGCTTCCTTCCTCGGTGCTACTATGAGGATGACTGTTTCGGTTTGCATCATATTATTGGAATTAACCAACAATCTCCTTTTACTTCCTCTTGTTATGCTAGTCCTTCTCATATCTAAAACAGTGGCTGATTCTTTCAATGGCAACATCTATGATCTCATTCTTTGCCTGAAAAGGCTTCCTTATCTCGAGGGGCATGCGGAACCCTATATGAGACTGCTGACGGTTGGCGATGTTGTCATGGGTCCTTTGCAAACCTTAAATGGCATCGAGAAAGTCGGTAATATCGTTCATGTACTCAAGACTACCGGTCATCATGGCTTTCCTGTGATTGATGAGCCTCCATTTTCCAGTGCTCCAGTTCTGTTTGGCTTAGTTCTCAGATCTCACCTTCTTGTTTTGCTGAAGAAAAAGCACTTCTTGCCAAATTGCACGTTGGCAAGTGCAGATATAACAAAAAATTACTCCAGAGAAGATTTTGCTAAGAGCAGCTCTGGCAAAAGAGATGGGATTGAAGATATAGTGCTCACTGAAGAACAAATGGAGATGCATATAGATCTTCACCCCTTCACAAATACCTCCCCTTTTACTGTGGTGGAGACTATGTCTCTGGCGAAAGCTTTGATACTCTTCAGGGAAGTTGGCTTGAGGCATCTGTTGGTCATTCCTAAGGCTTCTTGTCAGAGATCTCCCGTAGTTGGAATACTAACAAGGCATGATTTCATGCCTGAGCATATACTTGGCTTGCATCCATCGCTGTTGAAGAGCAGGTGGAAGAAATTAAGAATTGAAGGGTGGCCTTTCATTAGATATCTGAGGGGCATTTTTCTGGGATCTGACCATCCATCAGGCAATTCACTTAATCATGAATTCTGAGAATATTATTTTCAGCCTGAGAAGAAATTTGGAGGAGGTTAGACTTTATTGTGTTTATTATTATTTGTTGTATATTTTTAAGGTATTCATGGAACTGCATATTCAGTCATAATGTATTATTTATTCTGGTGCTTCAGCTGTAAGACTTAATATAGGCATTTTTCAATTGTATGTTCCCATCTGTTTCGTATCGTGGGGATTGGGATCAAAGAGTTCGCATACATCCC

Network for GWHGAAEX011535

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00654.19	Voltage_CLC	137	550	4.50E-86
PF00571.27	CBS	698	747	0.0016

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006821	Biological Process	chloride transport
GO:0055085	Biological Process	transmembrane transport
GO:0005247	Molecular Function	voltage-gated chloride channel activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.350
SRP064423	SRR2545915	Juvenile tuber	10.650
SRP108465	SRR5643513	five period of Gastrodia elata	7.190
	SRR5643514	five period of Gastrodia elata	7.110
	SRR5643515	five period of Gastrodia elata	5.580
	SRR5643524	five period of Gastrodia elata	7.980
	SRR5643525	five period of Gastrodia elata	11.740
	SRR5643528	five period of Gastrodia elata	15.060
	SRR5643658	five period of Gastrodia elata	13.860
	SRR5643659	five period of Gastrodia elata	6.470
	SRR5643660	five period of Gastrodia elata	5.730
	SRR5643661	five period of Gastrodia elata	7.250
	SRR5643662	five period of Gastrodia elata	6.710
	SRR5643663	five period of Gastrodia elata	6.870
	SRR5643664	five period of Gastrodia elata	6.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.550
SRP279888	Gastro	Gastrodia elata tuber	7.86
	Juven	Juvenile tuber	5.08
	Mother_Gastro	Mother tuber of Gastrodia elata	13.10
	Mother_Juven	Mother tuber of Juvenile	9.59