Gene detail

Detail information of GWHGAAEX011536/evm.TU.scaffold_38.114

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|440684418\|ref\|YP_007159213.1\|	3.00E-14	GTP-binding protein HSR1-related protein [Anabaena cylindrica PCC 7122]
nr	gi\|743808320\|ref\|XP_010928307.1\|	0	PREDICTED: translocase of chloroplast 90, chloroplastic isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q6S5G3\|TOC90_ARATH	0	Translocase of chloroplast 90, chloroplastic
trEMBL	tr\|M0RYK0\|M0RYK0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P09910_001}
TAIR	AT5G20300	0	Avirulence induced gene (AIG1) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	3364035	3379201	-

Transcript Sequence
>GWHTAAEX011536 AGAGGTTGGAAGGGGTCGCCGAGAGGCCCGACTCCCTCTCATTGTATGGCTTCCAAGCTTTCCATTCGTAAGCAATCAAATAAGACAAATAACACTGAAAATGTCTTGGATGACAAACCTGAAAGTAGTCATGGGAAGGGCCAAAATTATTTACTGTGGCAGCCTATATGGATAAATGAACTTTTTAAGATGATGATTGAGATAAGCACTGATTATAGTTTCAAGTGTAATGGTTAATGGAGAACAACTGCATATGCTGAAGTTGCAAGAAAATTAAATGATATGTTCAACAATCCAGGTGTAACGACAGATCATGTTATTCCACAAGTTAGGAGCTAAAGGCGTAGATGGGACATCATTTATAAGATGAAGGGTTTGTCAAGTGCTAGTTGTGTTGAAAAGATTATTAAGATTGGACAGTTGGAGGCACTCCAAATTGCACAGGCACACTGGACATGAATGGAGGTACCATGATTTCTTCTCAAAGACCTCAAAGTGAGAGCCAAGTAAACATATCTTCAGCCCATGCATCGCCCATTTTGACTGAAGCCTCTGTTCTAGTTCAGTTTAATAGCAACAAGGAGAACAAAGATCCTTTGACTCAAGTTGAATTGATTCGAATTAAGTTCCTCCGTCTTGTCCAACGAATTGGGCAGTCTCCAGCGAATCCAGTGGTTTCTCGGGTTCTATATCGGTTGGAGCTTGTGAGTTTGATACTAGCTGGCGAATGCACTCTAAAGAAGCCTGGCCTTAAGCTTGATAAAGCTAGAGCAATAGCATTAGCATTAGAAGAGTCAGGCCAAGATGATATTGACTTTGCTTTAAAGATACTTGTTTTAGGAAAGACTGGTGTGGGTAAGAGTGCAACTATAAACTCTTTATTTGATCAGGAAAGAGTAACTACCAATGCATTTCAGCCTTCGACTGGATGTATTCAGCAGGTTGAAGGGACAATCAATGGAATTAAAGTCACAATGATTGATACACCTGGCCTTTTACCTTCAAACACTGACCAACGCAGAACCAGGAAGATATTGATTCAAGTTAGAAAGTTTATTAGGAAATTTTCTCCAGATGTAGTTCTTTATTTTGAACGACTTGATTTTTATAACAGGGGCTGCTATGATATCCCGTTGTTAAAGCTCATCACTGATGTTTTTGGTTCTTCCATCTGGCTCAACACTGTTCTTGTTTTGACACATTCTTCATCTCCTTTACCAGAAGGAATAGATGGTTATCCAGTAAGCTACGAGGCATTTGTTAGTCAACGTTCAAACCTACTGCAATCATATATACATAAGGCAGTATCAAATACTCGGCTTGAGAATCCTGTCCTTTTAGTGGAGAATCATCCCATGTGCATGAAGAATTTTAAAGGTGAGAAGGTGCTTCCTACTGGAGAAGCTTGGTTGTCACAACTTTTACTTTTAAGCATTTCTACTAAGGTCTTGGGTGATGCAAACTTCCTTTTGAAGTACCAAGACCGTTTTCAATTAGCAAAGTCTGATAATATCAGGCAGCTTTCCTTACCACATATCCTATCATCACTTCTCCAACCACATTCTTTGTGGGCAATCAACGTTGGAAATGATGCTGAGGTGGATGACTTATCATATAATGAGGACGATGAGTATGATCTACTCCCACCAATCCGTATACTAACCAAAGCCCAGTACCAGCAATTATCAAAAATACAGAAAAAGGCATATCTTGATGAATTGGATTATCGTGAGACTCTGTATCTTAAGAAACAATGGAGAGCAGAGGCTAGAAGGCATAAAGAAAGCATGTTTCCAGATAATGGTGCATCTGAAAGTAGTGAATATGAAAACAGCTCTTTCCATGAGGTTGTCCAATTGCCAGATACGACAATTCCATTAAGTTTTGACTCTGATTACCCTTCTCATAGATACCGATGCTTACTGGGACTTAATGAATTTATTCTTCAGCCTGTACTGAATTCCCAAGGCTGGGATCATGATGTTAATTTCGATGGGATCAATTTGGATTTCTCCAAAGAAATAAAAAAAAACCTTATGGCTTCAGTTGCAGGACAAATGAGGAAAGATAAGGAGAATCTCAGTATCCAGTCAGAATCCGGAGTAAGCTTTGTGCATGGAATCAGGCACTTTTTATCTTCTTTTGACATTCAAATGGCTGGTAAGGATTTGATTTGCACTTTTCGTGGAGATTTCAAGTTTCAGAACTTGAAGTGCAACAGCACTGGATGCGGGATTTCTATGACCTCATTTGGAAAAATGTGTTTCATTGGAACCAAGATTGAGGATTCCATTTCAATTGGTAGGAGGTTCAAGGTTGTAGCTAATGCAGGTAGGATTGTAGGCAATAGTCAGGAGGCGTATGGTGGAAGCTTAGAAATTTTGTTGAGAGGAAAGGATTTCCCTGTGAGAGATGAGAAGATAATTGTAGCCGCTACCATCCTTTCATTTGATAAAGAAATGGTTTTGGGAGGAAGTTTGCGGACTGAGTTCCGGATAGGTCATACTGCAAGAGTGTCCTTCAATGCAAACATGAACAGTAGAGGTTTAAGTCAGATTTCATTCAAGACCAGCACTTCTGAACATCTTAAATTAGGATTTATTGCCTTTCTGTCACTTATTCAAGCTCTGTTTCATAGAAGAATTAGTAGAAACAAATGGGAGAAGCCTTGATTAATCTAAGTATACCTAGGTGATTCAATTGTGTCCACCTTCTCTGCTTGTTTCCCAAGTTCTTTGGACAGCGTTGATGGCGAGGGGAGCTTAGCAGCTCAGTATTTGTACATGTATTAGAAATGCAATGTTTCTTGTAGGTTTGCCAAGTGCTTTCGGCATATAAATTGTTTGGTTAAAAGGGAAAATAAGTGGTCTTAACATGTTCAGACACAAATATCCATCCATCACTGTTGTTTAATCACGTTTTGGATACAATGAACTGCATGCAACTCTGTAACTAACCCGTTATTATTTGCACTTTTCAGAGCCATTCTGATATGTTTCAACTGATATGTAAGTAATGACAGTATAACGTTGCAATGCTTTGTTTGCAAGGTTATTATTCACATAATGGTAGATGATGTCAAGTTTAAGTTGATCACTACTGGATAATTTTAAAGAAGAAATTCATGTAAAGTTAACTTGTGTAAGGCTCTTGTTTAGCTTTAGTGTTGACAACTTCCATTTATTGATTTATTGATCTACAGACTGCCTAAAGCTCATTCTATGAATCAATGTTAGCCAAGAGTATCAGAACTCTTTCAAGTGTTCGCTGAACATGAAATATGGTTGATACCACAACACATTATATCAAACTATTTGGATGCTGTTTTTTGTTGAATATATATATATATAGTGCTTGCTAAATCAATTTTAGCATCTTTCTGCAAACAATAAAAAGGTTTCTTTTAATGAACACTTGT

Network for GWHGAAEX011536

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04548.15	AIG1	124	276	2.80E-22
PF11886.7	TOC159_MAD	465	728	4.50E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.210
SRP064423	SRR2545915	Juvenile tuber	25.730
SRP108465	SRR5643513	five period of Gastrodia elata	7.870
	SRR5643514	five period of Gastrodia elata	7.080
	SRR5643515	five period of Gastrodia elata	8.890
	SRR5643524	five period of Gastrodia elata	6.400
	SRR5643525	five period of Gastrodia elata	8.440
	SRR5643528	five period of Gastrodia elata	7.090
	SRR5643658	five period of Gastrodia elata	7.440
	SRR5643659	five period of Gastrodia elata	7.890
	SRR5643660	five period of Gastrodia elata	9.310
	SRR5643661	five period of Gastrodia elata	7.170
	SRR5643662	five period of Gastrodia elata	8.630
	SRR5643663	five period of Gastrodia elata	8.370
	SRR5643664	five period of Gastrodia elata	5.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.320
SRP279888	Gastro	Gastrodia elata tuber	5.61
	Juven	Juvenile tuber	8.65
	Mother_Gastro	Mother tuber of Gastrodia elata	9.47
	Mother_Juven	Mother tuber of Juvenile	9.59