Detail information of GWHGAAEX011537/evm.TU.scaffold_38.115


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|337286143|ref|YP_004625616.1|3.00E-149cysteinyl-tRNA synthetase [Thermodesulfatator indicus DSM 15286]
KOGKOG20070Cysteinyl-tRNA synthetase
nrgi|359476173|ref|XP_002285478.2|0PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Vitis vinifera]
trEMBLtr|A0A0A0LJ88|A0A0A0LJ88_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN60076.1}
TAIRAT2G311700Cysteinyl-tRNA synthetase, class Ia family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004133874233406443+
Transcript Sequence

Network for GWHGAAEX011537

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01406.18tRNA-synt_1e803924.60E-115
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01883CARS, cysS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0006423Biological Processcysteinyl-tRNA aminoacylation
GO:0005524Molecular FunctionATP binding
GO:0004817Molecular Functioncysteine-tRNA ligase activity
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0000166Molecular Functionnucleotide binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.690
SRR2545915Juvenile tuber9.030
SRP108465SRR5643513five period of Gastrodia elata6.580
SRR5643514five period of Gastrodia elata10.830
SRR5643515five period of Gastrodia elata8.810
SRR5643524five period of Gastrodia elata7.850
SRR5643525five period of Gastrodia elata8.110
SRR5643528five period of Gastrodia elata7.960
SRR5643658five period of Gastrodia elata8.870
SRR5643659five period of Gastrodia elata9.050
SRR5643660five period of Gastrodia elata8.990
SRR5643661five period of Gastrodia elata6.660
SRR5643662five period of Gastrodia elata8.900
SRR5643663five period of Gastrodia elata9.270
SRR5643664five period of Gastrodia elata8.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.220
SRR6049655Rhizomagastrodiae_C368-T10_good_18.510
SRR6049656Rhizomagastrodiae_C368-T07_good_15.770
SRR6049657Rhizomagastrodiae_C368-T07_good_16.020
SRR6049658Rhizomagastrodiae_C368-T04_good_13.940
SRR6049659Rhizomagastrodiae_C368-T04_good_14.020
SRR6049660Rhizomagastrodiae_C368-T01_good_14.950
SRR6049661Rhizomagastrodiae_C368-T04_good_13.830
SRR6049662Rhizomagastrodiae_C368-T01_good_16.100
SRR6049663Rhizomagastrodiae_C368-T01_good_13.850
SRR6049664Rhizomagastrodiae_C368-T10_good_19.150
SRR6049665Rhizomagastrodiae_C368-T10_good_19.150
SRP279888GastroGastrodia elata tuber 8.38
JuvenJuvenile tuber11.18
Mother_GastroMother tuber of Gastrodia elata 6.83
Mother_JuvenMother tuber of Juvenile 8.67