Detail information of GWHGAAEX011541/evm.TU.scaffold_38.119


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08040Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein)
nrgi|743808128|ref|XP_010928262.1|0PREDICTED: BRCA1-associated protein [Elaeis guineensis]
Swissprottr|Q8W571|ATL32_ARATH2.00E-07RING-H2 finger protein ATL32 (Precursor)
trEMBLtr|M0SEA3|M0SEA3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P13360_001}
TAIRAT2G260000zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004134490653512162+
Transcript Sequence

Network for GWHGAAEX011541

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07576.11BRAP2911871.20E-31
PF13639.5zf-RING_21992403.80E-09
PF02148.18zf-UBP2513105.20E-17
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
K10632BRAP Ras signaling pathway map04014

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.900
SRR2545915Juvenile tuber26.050
SRP108465SRR5643513five period of Gastrodia elata13.970
SRR5643514five period of Gastrodia elata12.880
SRR5643515five period of Gastrodia elata14.340
SRR5643524five period of Gastrodia elata16.350
SRR5643525five period of Gastrodia elata14.060
SRR5643528five period of Gastrodia elata14.870
SRR5643658five period of Gastrodia elata15.310
SRR5643659five period of Gastrodia elata12.810
SRR5643660five period of Gastrodia elata15.040
SRR5643661five period of Gastrodia elata12.920
SRR5643662five period of Gastrodia elata16.590
SRR5643663five period of Gastrodia elata14.270
SRR5643664five period of Gastrodia elata13.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.020
SRR6049655Rhizomagastrodiae_C368-T10_good_113.920
SRR6049656Rhizomagastrodiae_C368-T07_good_115.710
SRR6049657Rhizomagastrodiae_C368-T07_good_118.880
SRR6049658Rhizomagastrodiae_C368-T04_good_121.460
SRR6049659Rhizomagastrodiae_C368-T04_good_124.160
SRR6049660Rhizomagastrodiae_C368-T01_good_118.780
SRR6049661Rhizomagastrodiae_C368-T04_good_119.080
SRR6049662Rhizomagastrodiae_C368-T01_good_115.600
SRR6049663Rhizomagastrodiae_C368-T01_good_115.500
SRR6049664Rhizomagastrodiae_C368-T10_good_115.750
SRR6049665Rhizomagastrodiae_C368-T10_good_115.750
SRP279888GastroGastrodia elata tuber 25.51
JuvenJuvenile tuber23.29
Mother_GastroMother tuber of Gastrodia elata 35.79
Mother_JuvenMother tuber of Juvenile 38.61