Detail information of GWHGAAEX011542/evm.TU.scaffold_38.120
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0773 | 5.00E-176 | Transcription factor MEIS1 and related HOX domain proteins |
| nr | gi|695040890|ref|XP_009408038.1| | 0 | PREDICTED: homeobox protein knotted-1-like 13 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P48000|KNAT3_ARATH | 1.00E-176 | Homeobox protein knotted-1-like 3 |
| trEMBL | tr|M0TEV7|M0TEV7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P05170_001} |
| TAIR | AT5G25220 | 5.00E-176 | KNOTTED1-like homeobox gene 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 3514311 | 3524936 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011542
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03790.12 | KNOX1 | 125 | 166 | 9.40E-16 |
| PF03791.12 | KNOX2 | 183 | 232 | 2.10E-19 |
| PF03789.12 | ELK | 290 | 311 | 9.40E-07 |
| PF05920.10 | Homeobox_KN | 330 | 369 | 3.00E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-KNOX |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.120 |
| SRR2545915 | Juvenile tuber | 19.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.740 |
| SRR5643514 | five period of Gastrodia elata | 20.640 | |
| SRR5643515 | five period of Gastrodia elata | 25.910 | |
| SRR5643524 | five period of Gastrodia elata | 21.830 | |
| SRR5643525 | five period of Gastrodia elata | 26.110 | |
| SRR5643528 | five period of Gastrodia elata | 33.950 | |
| SRR5643658 | five period of Gastrodia elata | 40.610 | |
| SRR5643659 | five period of Gastrodia elata | 53.620 | |
| SRR5643660 | five period of Gastrodia elata | 63.470 | |
| SRR5643661 | five period of Gastrodia elata | 46.460 | |
| SRR5643662 | five period of Gastrodia elata | 32.740 | |
| SRR5643663 | five period of Gastrodia elata | 25.310 | |
| SRR5643664 | five period of Gastrodia elata | 29.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.98 |
| Juven | Juvenile tuber | 30.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.42 | |
| Mother_Juven | Mother tuber of Juvenile | 70.94 |