Detail information of GWHGAAEX011544/evm.TU.scaffold_38.122


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29714.00E-172RNA-binding protein required for biogenesis of the ribosomal 60S subunit
nrgi|743808905|ref|XP_010928453.1|0PREDICTED: ribosome biogenesis protein BRX1-like isoform X1 [Elaeis guineensis]
trEMBLtr|A5BL36|A5BL36_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN61504.1}
TAIRAT3G154604.00E-172Ribosomal RNA processing Brix domain protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004135903303603211-
Transcript Sequence

Network for GWHGAAEX011544

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04427.17Brix592479.40E-32
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms68.470
SRR2545915Juvenile tuber72.720
SRP108465SRR5643513five period of Gastrodia elata45.600
SRR5643514five period of Gastrodia elata47.920
SRR5643515five period of Gastrodia elata45.010
SRR5643524five period of Gastrodia elata47.990
SRR5643525five period of Gastrodia elata24.460
SRR5643528five period of Gastrodia elata23.470
SRR5643658five period of Gastrodia elata18.490
SRR5643659five period of Gastrodia elata68.590
SRR5643660five period of Gastrodia elata68.770
SRR5643661five period of Gastrodia elata66.480
SRR5643662five period of Gastrodia elata67.240
SRR5643663five period of Gastrodia elata65.860
SRR5643664five period of Gastrodia elata61.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.660
SRR6049655Rhizomagastrodiae_C368-T10_good_126.700
SRR6049656Rhizomagastrodiae_C368-T07_good_139.750
SRR6049657Rhizomagastrodiae_C368-T07_good_137.670
SRR6049658Rhizomagastrodiae_C368-T04_good_138.220
SRR6049659Rhizomagastrodiae_C368-T04_good_136.300
SRR6049660Rhizomagastrodiae_C368-T01_good_138.020
SRR6049661Rhizomagastrodiae_C368-T04_good_135.120
SRR6049662Rhizomagastrodiae_C368-T01_good_137.850
SRR6049663Rhizomagastrodiae_C368-T01_good_136.710
SRR6049664Rhizomagastrodiae_C368-T10_good_151.890
SRR6049665Rhizomagastrodiae_C368-T10_good_151.890
SRP279888GastroGastrodia elata tuber 57.57
JuvenJuvenile tuber55.16
Mother_GastroMother tuber of Gastrodia elata 23.73
Mother_JuvenMother tuber of Juvenile 35.34