Detail information of GWHGAAEX011546/evm.TU.scaffold_38.124_evm.TU.scaffold_38.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|13542321|ref|NP_112009.1| | 1.00E-23 | RNA helicase (ERCC4-like) [Thermoplasma volcanium GSS1] |
| KOG | KOG0701 | 0 | dsRNA-specific nuclease Dicer and related ribonucleases |
| nr | gi|743822250|ref|XP_010932228.1| | 0 | PREDICTED: endoribonuclease Dicer homolog 4 [Elaeis guineensis] |
| Swissprot | tr|A7LFZ6|DCL4_ORYSJ | 0 | Endoribonuclease Dicer homolog 4 |
| trEMBL | tr|A0A088S8B8|A0A088S8B8_COCNU | 0 | Putative endoribonuclease dicer 4-like protein 4 {ECO:0000313|EMBL:AIO05703.1} (Fragment) |
| TAIR | AT5G20320 | 0 | dicer-like 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 3644679 | 3748162 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011546
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04851.14 | ResIII | 31 | 187 | 6.00E-15 |
| PF00271.30 | Helicase_C | 369 | 485 | 5.30E-19 |
| PF03368.13 | Dicer_dimer | 551 | 636 | 1.20E-22 |
| PF02170.21 | PAZ | 848 | 968 | 9.60E-09 |
| PF00636.25 | Ribonuclease_3 | 1011 | 1140 | 7.90E-18 |
| PF00636.25 | Ribonuclease_3 | 1216 | 1325 | 6.00E-23 |
| PF14709.6 | DND1_DSRM | 1530 | 1606 | 1.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004525 | Molecular Function | ribonuclease III activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0016891 | Molecular Function | endoribonuclease activity, producing 5'-phosphomonoesters |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.850 |
| SRR2545915 | Juvenile tuber | 12.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.320 |
| SRR5643514 | five period of Gastrodia elata | 10.040 | |
| SRR5643515 | five period of Gastrodia elata | 8.450 | |
| SRR5643524 | five period of Gastrodia elata | 9.710 | |
| SRR5643525 | five period of Gastrodia elata | 7.810 | |
| SRR5643528 | five period of Gastrodia elata | 6.300 | |
| SRR5643658 | five period of Gastrodia elata | 8.290 | |
| SRR5643659 | five period of Gastrodia elata | 9.240 | |
| SRR5643660 | five period of Gastrodia elata | 9.480 | |
| SRR5643661 | five period of Gastrodia elata | 6.930 | |
| SRR5643662 | five period of Gastrodia elata | 8.970 | |
| SRR5643663 | five period of Gastrodia elata | 10.590 | |
| SRR5643664 | five period of Gastrodia elata | 10.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.14 |
| Juven | Juvenile tuber | 14.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.27 | |
| Mother_Juven | Mother tuber of Juvenile | 12.62 |