Gene detail

Detail information of GWHGAAEX011550/evm.TU.scaffold_38.130

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|11498895\|ref\|NP_070126.1\|	5.00E-61	cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
KOG	KOG0739	0	AAA+-type ATPase
nr	gi\|743801994\|ref\|XP_010926491.1\|	0	PREDICTED: vacuolar protein sorting-associated protein 4B-like [Elaeis guineensis]
Swissprot	tr\|Q9ZNT0\|VPS4_ARATH	0	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 {ECO:0000303\|PubMed:17468262}
trEMBL	tr\|A0A088QDC7\|A0A088QDC7_HEVBR	0	K+ transport growth defect-like protein {ECO:0000313\|EMBL:AIN75626.1}
TAIR	AT2G27600	0	AAA-type ATPase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	3758715	3784235	-

Transcript Sequence
>GWHTAAEX011550 GAAGTTTATGTAAATCTCTCTCTTTGACGTTTACATGTACACACTGGTCTCTGGATCTCTTTTTCCAGTCATCCCTCTCTTCGTTCCTTGTACAAGTTTTACGACTGCTTTTGTCAGGCCAGTAAGCCATAGCTCCCAAATCCCTATATCTCTCCACCGATCGATTTATATGTACTTCTCATATCTGCTGATCATTAGGGTTTTGATCCGATCGGAATATCGGCATAGCTGTCTTCCTAGAATCTAGGGTTTTACTTTTTGGCTTCCTTCCATTGAATCAAGTTTATGAGATTGGTGCGGGGGAAGCAGAAGAGGAACAGGAGATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAGGCGGTACAGGAAGACAATGCTGGGAACTATGTCAAGGCCTTTCCCCTGTACATGAACGCGCTCGAATACTTCAAGACGCATCTCAAGTACGAGAAAAACCCTAAGATCAAGGAAGCGATCACCCAGAAGTTCACCGAATATCTTCGACGCGCCGAGGAGATACGCGCCGTGCTTGATGAGGGAGGGCCAGGGCCGGCTTCTAATGGTGATGCAGCCGTTGCTATGAAGCCGAAGACAAAGCCTAAGGATGGAGATGATGGAGGGGATGATCCGGATCAGGCCAAGCTTAGGGCGGGGCTTAGCTCAGCGATCATACGAGAGAAGCCAAACGTTAAATGGAATGATGTTGCCGGCCTTGAGGGTGCTAAACAGGCCTTGCAGGAAGCTGTCATATTTCCCGTCAAGTTTCCTCAGTTCTTCACAGGTAAGCGACGTCCATGGAGAGCATTTCTTTTATATGGACCACCTGGAACAGGAAAGTCTTATTTGGCTAAGGCCGTTGCAACAGAGGCTGAATCAACTTTCTTTAGTATATCTTCATCAGACCTTGTTTCCAAATGGATGGGTGAAAGTGAAAAGCTAGTTTCAAATCTATTTAAAATGTCTCGTGAAAATGCTCCTTCAATCATATTCATCGATGAAATCGATTCACTTTGTGGTCAGCGTGGAGAAGGCAATGAAAGTGAAGCATCACGTAGGATAAAAACAGAGCTGCTTGTTCAAATGCAGGGCGTAGGCAATAATGACCAGAAAGTTCTTGTGCTTGCAGCTACAAATACACCATATGCTCTGGATCAGGCTGTAAGGCGCCGTTTCGACAAGCGAATCTACATTCCTCTTCCTGACCTCAAGGCCCGTCAGCACATGTTCAAGGTGCATCTGGGGGATACTCCTAACAATTTAACTGAAAATGATTTTGAGAACTTGGCTCGCAGGACTGAAGGTTTTTCCGGTTCTGATATTTTTGTTTGCATAAAGGATGTTCTTTTCGAGCCAGTTCGAAAAACCCAAGATGCCATGTTTTTCATAAAAAATTCGGATGGTATGTTGTTGCCCTGTGGGTCAAATACTCCAGGCTCTGTACAGACCACAATTGAGGAACTTGCAACGGAAGGACTTGCTGCCAAGATTCTTCCACCGCCGATCTCAAGGACAGATTTCGACAAAGTGCTTGCGAGGCAGCGACCAACAGTCAGCAAAGCAGATTTAGAGGTTCATGAAAGATTCACAAAGGAGTTTGGAGAAGAGGGTTAAAGAGAAGCATCATCTGCCCGACCTTTCTTTAGAGGGGCATCCTATGGTCTGCTCTTAGTGCCTAAATTCTCCAGCGCAGCTTTCACTTAGCAGTCCTGTTGCAATATTTATTTTTTCTCATATTTGTTGTATACATCATCAGTTCCACAATTTTTATTTTTACTTGTGCTTTATCTTTGGTGTCGTTTGCTTTGTAAGATAAACATTCTACCCAACAGTATAATATTGCTCTTATTTTATATCTATTCTATAAACCTAGCCTCTAAGTTTGATTGGGATATTCAAATGTATAATTAGCTAGAGGTGCTCCTTCACTTTATTCAACTTTCTTTAATCTTGTTAATCGTATCACATTTTGTTTCAATATTATTTTTGATAGAATTTGGGCATTCAAACAATTTTACTTTTTGATGTTATGATCTCCACAGGAAGCTGCAACAGTATACTCCCATCAACATCATTAAAATATAGTATTAACTTGTAATCATTGAAATTTATTAGTCAAAATCACAATTACAAATTCATCAAAGATAATTAATAATATAAGAAAAAGTGTTGGGTATTGTTGAGCGTATATACAAGCATTTCTGATTTCTATATTAGAATTTCTAAAGTCACTATCACTCTTTATACTCCACAAAACCCTTTAGATTCTAGTAGAGTTTTCAATAGCACAATTGGCTGGTCTTGTCAATTAGAAATGCATCTTGAATGTATTTAGCAGAAGCTATTATAATTAGTTTAAAACCCAAATTTCTAAATGATATTGTTTGACAACCAGAGTAATCCTTCCATAGTTGTAAGAACAATGGTCGTGTTGATTGATGATTTTTTTGTTGCAGCTTATTATCATGTGTTGCTTATTTGTAGTTAATCATGTTTTTATTTTATTAATCTCATTCTTTAGAATTTTATAATAATTTAAGGTCTATAAAACTAAAAAGAATATACAATTGAGGCTCTATATGGTTTTAATTAGAGCCAACTTAAAGCTTGAACTGTTTTGTGTTTTCAACTTAGCTTAAGTTAGTTTAAACTTTTTTAGGGTTGAATTGAATAGTTCTGCTTTAAGTTAAAGCAATGCTTGATTTATGTTTAATGATATTCTCATTGATGTGTGGAAATATTTAGAAGAGAAAGGAGGAGTAAGTTCATCAATTATTTAGGGTTTGTTTAGTATGTTTTGGATTTGTAGTGTATTATGATTATATTGCAATCTGATTTTAATATAATTTGATTATTTTGTAGCTGTTTGATTGTTAGTTTGGAATACTATAATTTGTAGAAAATGATACTTTTAGTAATTCGGTGGTGAGATTACTCTATTTAATGTTTATACTTTTCAAAGGCATCAACCATAATATGGCCGAAATATGCAATGCAAGTTTAGAACAGCATAAATTATAATATCATTAGTTAGTACATCCTATTTTATTCAGTTTATAATCAAGAGAATTTTTAATTAACCAACATCTAGCGACAAAAATAAGTAAAAATTGAAAGAATTAGTCGTAGTTGCGCCATTGGAGAGGACGAAGATCTTCTTCAAGGATGCTCCAACTCCTTCCAAAACAAAAAAAACTCGGCGACGGAGGCTTTAAGGTGGAAGACCCGTGACAACTGTGAAGATCCTTGCATGTCTCTTCACTTCGCCTCTGTCGTCGTCAAACTCTGCTTCCGCGCGGGCGAGCTCTATTGTCATCTTCATTGCTTTGGCGAACCCCTGCAAAGACGAATCGGCTTTGATCTTGTTCTCTCGCCCTGGCCCGGATTCTATTTCTTTCCAAGGGTCCCCCACTTCCTTGGCTTTAGGCTTCACTAACCTTGCTTGGCAATAGAAATTCTATACATGAATTTTTGGGGCCTAGCATTGCCCTCTTAGTGAGACAAGAAAATTGTTTGGCTTTCAAGAGGCTGCATAAGCTATAGTT

Network for GWHGAAEX011550

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04212.17	MIT	7	70	2.70E-21
PF00004.28	AAA	166	295	1.70E-43
PF09336.9	Vps4_C	365	429	2.10E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12196	VPS4	Endocytosis	map04144
K12196	VPS4	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.400
SRP064423	SRR2545915	Juvenile tuber	48.130
SRP108465	SRR5643513	five period of Gastrodia elata	50.750
	SRR5643514	five period of Gastrodia elata	51.930
	SRR5643515	five period of Gastrodia elata	50.430
	SRR5643524	five period of Gastrodia elata	52.100
	SRR5643525	five period of Gastrodia elata	53.760
	SRR5643528	five period of Gastrodia elata	59.960
	SRR5643658	five period of Gastrodia elata	59.020
	SRR5643659	five period of Gastrodia elata	49.530
	SRR5643660	five period of Gastrodia elata	51.520
	SRR5643661	five period of Gastrodia elata	49.540
	SRR5643662	five period of Gastrodia elata	57.290
	SRR5643663	five period of Gastrodia elata	52.640
	SRR5643664	five period of Gastrodia elata	58.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	59.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	57.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	67.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.600
SRP279888	Gastro	Gastrodia elata tuber	55.39
	Juven	Juvenile tuber	72.70
	Mother_Gastro	Mother tuber of Gastrodia elata	61.70
	Mother_Juven	Mother tuber of Juvenile	83.60