Gene detail

Detail information of GWHGAAEX011553/evm.TU.scaffold_38.133

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|146298365\|ref\|YP_001192956.1\|	1.00E-31	two component regulator [Flavobacterium johnsoniae UW101]
nr	gi\|743757543\|ref\|XP_010922469.1\|	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Elaeis guineensis]
Swissprot	tr\|Q9C9N5\|Y1668_ARATH	0	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor)
trEMBL	tr\|A0A067KRV8\|A0A067KRV8_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP35025.1}
TAIR	AT2G01210	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	3859973	3863341	-

Transcript Sequence
>GWHTAAEX011553 CGCTTCACTGCCCTCAGAACCTTTACCAATTTCTAAGAAAAAAGCCCTCGCTGAATCCAAGATCCGATTTTTAACACTCGAGCTTCTCTGCCGTCTCTCCTATCCTCCCTCCAAGAATGACGTTTGCATCCACAGCAGCTTCCATTCGGCTCCTCTTCTTCCTGCTGAACTCTTGCAAAGTTCTCTCCTTGAATGAAGAGGGATCTGCCCTTTTGTCCTTCAGGCAAGCCATCATTGAGGACCCAAAAGGCTCTCTTGCTAACTGGAACTCCTCTGATGAGGATCCTTGCATCTGGAACGGGATCACATGCAGAGAAGGGAAAGTGATTTCTATCAGCTTTCCCAAATCTAGACTAACAGGTAGCCTCTCTCCTTCCATTGGCTCCCTACGTTATCTCAGGCACATCAATCTTAGGAACAACAGGCTGCATGGAAGTTTGCATTCTGAGATTTTTAAAACGCAGAAGCTCCAAAGTTTGGTTCTTTATGGAAATTTCTTTTCTGGCTCTCTTCCTCCTGAGATTGGCAACCTTTCTTACCTTCAAATTTTAGACGCTTCCCAAAATCAATTGAATGGCTCCATGCCGGCTTCTATTCTCGGTTGTCATAGGTTGAAAGCCCTTGCTTTAAGTCATAATAGCCTCACAGGTGCATTACCCGAAGGTTTCGGGATCAGCTTTGCTGATTTGGAAAAACTTGATCTTTCCTTCAATAGATTCAGTGGCTCAATTCCTAGTGATATTGGTAATCTTTCTAAACTACAGGGCACCCTTGGCTTTTCCCACAATATCTTCTCTGGATTAATTCCTCAGAGTCTTGGAAATCTATCTGAGAGGGTCTACATTGATCTGGCATACAATAATCTGAGCGGTCCAGTGCCAAAAAGTGGAGCTTTGGGTAATAGAGGCCCTACTGCTTTTATTGGAAATCCTGGATTGTGTGGCCTTCCATTGCAGATCCCATGTCTTCCATTTTTGCTGCCTCCTGCTATTCCAACAAGCTCAAGTTCAAACAATGGAAGCTATAGCAGAAGGTTGAAAGGAAGTGTGATGGTGGCAATTGTTCTCAGTGATCTAGCAGCTGTTGGTCTTATAGCAATACTGTTCTATTTCTGTTATCTTAGGGCAATTTCTTCCAAGGGAAAAGAGGAAGAAAGGTACTTGGGCAAAGGTTCAGAAAACTCAAAGGAGTGTTTGTGTTTTAGGAAAGATGGGATTGAACAACTATCAGAAACTTTAGAGCAGTTAGACCTCATACCGTTGGACAAGCAGGTGCATTTTGATTTGGACGAGCTCTTAAAAGCATCTGCTTTTGTTTTGGGGAAGAGCGGCCTTGGCATTGTTTACAAGGTTGTGCTTGAAGATGGGCTTACCCTGGCTGTTAGAAGGCTAGGGGAAGGAGGCTCCCGGATGTTTAAAGAGTTTCAAAAGGAAGTTGAAGCCATGGGAAGGATCAAGCATCCCAATATTGTTGCATTGAGGGCTTTTTATTGGTCTTTCGAAGAGAAACTTCTTATTTATAATTTTATATCTGGTGGGAATCTATCTACTGCCATTCATGGTGAGGCTGGAGCTTCTGATTTTTCTCCACTGCCATGGGATGCCAGGGTCAAAATCATGAATGGAGTAGCAAGAGGCTTGGCTTACCTCCATGAATTCAGCCAAAAGAAATATGTGCATGGAGATATAAAGCCCAACAACATACTTCTTGGCTTGGACATGGAACCATTTATATCCGATTTCGGCGTCGGCCATCTTGCAGACATAGCCAGCGGATCTCCAGTGAAGCACCTGAACAAGAAGGTGACCTCAGAGAAATCACAGGCCTTTGATTATTCAGCAATCATAACCTGCGCACCGTCTTCTTACCAAGCTCCTGAAGCACAGAAAGGAATGAAGCCTTCTCAGAAATGGGATGTTTTCTCTTATGGAGTGATTTTGCTTGAGCTGATTTCTGGAAGATCTCCAGCTGCTTTACTTGAAACTCTTCAAATGGATTTGGTGCAGTGGGTTCAGCTCTGTATCGAAGAGAGAAAGCCTCTTTTGGATGTGTTGGATCCCTTTTTGGCCCAAGAGCTTGAGAAGGAAGATGAAATTATTACAGTACTTAAGATTGCTTTGGGTTGTGTACAGTTCAGTTCTGAAAAGAGGCCTTCTATGAGAAATGTTGCTGTGTCGTTGCAAAGGTTCAGCATTATCACATGAACAAGTGATCACATTAATAATACTATTAATTAGTAGAGCATATGGAGATCTTCTTCATTAGACTTTCATGTCCTTCAGCTTCGCAAGCACTTAACAATTAGTTTTTGGGTAATAGCGATTTGATTTTTAGTTTACAGATTCTTTTGTAACGTTGTATTTTAAAGGGTGGGTGTGTCGTAGTATTTGAATCTTCAGTTATGGAAACACTGATAATAATGAGATGGGCACTAGTTTTTTTTGGCTTGGGCTGCTCAATGTAGAGCTCAAAATACATGCATTATAGCAGCCCTCAAAAAAAGAACTGTGATGCACACTCGTATGAGAGAAGGCCGGAGATCGATACTGTTCACC

Network for GWHGAAEX011553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	26	65	5.90E-13
PF00560.32	LRR_1	191	212	1.2
PF00069.24	Pkinase	401	684	8.80E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.260
SRP064423	SRR2545915	Juvenile tuber	5.180
SRP108465	SRR5643513	five period of Gastrodia elata	3.210
	SRR5643514	five period of Gastrodia elata	3.980
	SRR5643515	five period of Gastrodia elata	2.910
	SRR5643524	five period of Gastrodia elata	4.170
	SRR5643525	five period of Gastrodia elata	4.350
	SRR5643528	five period of Gastrodia elata	2.390
	SRR5643658	five period of Gastrodia elata	3.230
	SRR5643659	five period of Gastrodia elata	5.710
	SRR5643660	five period of Gastrodia elata	4.950
	SRR5643661	five period of Gastrodia elata	5.150
	SRR5643662	five period of Gastrodia elata	4.720
	SRR5643663	five period of Gastrodia elata	6.490
	SRR5643664	five period of Gastrodia elata	3.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.230
SRP279888	Gastro	Gastrodia elata tuber	4.42
	Juven	Juvenile tuber	6.11
	Mother_Gastro	Mother tuber of Gastrodia elata	1.47
	Mother_Juven	Mother tuber of Juvenile	2.43