Gene detail

Detail information of GWHGAAEX011556/evm.TU.scaffold_38.136

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|694995257\|ref\|XP_009381838.1\|	2.03E-101	PREDICTED: uncharacterized protein LOC103969892 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0RX91\|M0RX91_MUSAM	8.00E-102	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P05330_001}
TAIR	AT1G68140	7.00E-55	Protein of unknown function (DUF1644)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	3906720	3909579	+

Transcript Sequence
>GWHTAAEX011556 GGGCGTTCAAACTTCCGATCGTCATCGCAGCACCAACTCTTTTGAATCGACGGACAGGATCGGCCGCAAATTTTTATTTTCCAGGAAGTGGGCGCCGCAAAAAAATAATGAAAACTCCCGGAAATTAAAAGATCGGGCATATATATCGCATTATTTGCAATCTCGCCCTTTTCTTTTCCTCGATCTCCCAAAACTAGGGTTTGTCTTCCACTTCGATCCTCTCTATTCCTCCCTCCTTCCTCACTCTCATCAACTTATTACGATGCCTAAGGAAAGACGAAGCCGTTCCGTATCCTTCGATCGCCCGTCTCCTTTGCCTGCCCGTTCCTCCAATCGCCGGCGTCGCTCTCCTCTCCCATCGTCGTCAACAAATCCCCCCAGATCTGCGATCGATCTGCAAGAATGGGACGAGATTCGCTGCCCCGTCTGCATGGAGCACCCTCACAACGCCGTCCTTCTCATCTGCGCCTCTCACGACAAAGGCTGTCGTCCTTTCATGTGCGACACCAGCTACCGCCATTCCAACTGCCTCGATCAGTACCGGAAAGCTATCGACGCGTCCATCGTGCCCGATGATTCCAAGCGAAACCTCTTCTGCCCTCTCTGCCGCGGCGTGGTCACGGGCTGGAAAGTCGTCGAGCCGGCACGGAGGCATATGAACGATAAAGCGCGGAGTTGCTCGACGGAGTCGTGCGTGTTTGCAGGAGCTTATAGCGAGCTGAGGAAGCACGCGAGGACGGAACATCCGCTCGTGCGGCCATCAGAGGCGGATCCTGAACGGGAGAGGGATTGGAGGAGGATGGAGCAGCAGCGAGATCTTGGCGATTTGTTCAGCACGATGCATTCTGCTCTCGGGGGAGAGGAGGATGGGTTGGCCTTTCTCGCCGATGGCGGAGAGTTTGGAGGTTTGGTTCCCTTTCCTACAATTACTTTTTTCTTAGTTTTGCGTTTTAGGGGAACTGTGGGGCTTAGTGGTAGCAGCACTGGAAGGTCTATTGGGAGTAGGAGGGAACCTTCCAACTTGAGGTCTCGGAGAGGAAGGCGAAGAGTTCTTTGGGGGGAGTCCATTGTTGAAGCTGAGCCTAGTGGGAGAGGTCTAAGGGATGGTGATGATGGTGGTGATGACAATGATGAAGATTATAATGAGGACGATTATGTGGATGATGATGTTGATGATGGTAATGTTGATGATGATACTAATGATGACGATGATGATGATGGCGGAAGTGAAGAGGTTCCCAGTACATCAAGACAGCATCAAAGGCGAACACGCCGACAACCCCGGATGGTGGAGGATGGTAATGATAGTGAAGACATTGTGATGTGATGTGCATGCCGTTCATTTGTTTTTTGGTGTTGGGGCTATTTGCGGATGGGTGAACTGATTGGCGCTCTGAGATCTGTAAATTGCTTCATTTCTTGTTGCATGAGCAGTGCTTCATGTTTTGGGTCTAAGTTTGTTCTATGAAATGCAGAGATGGTTCTGCATCTTTTGGATTTAGGTGGGAGGAGTAGGGAAGGAAGATATTGGAAAAGTAAGGCGTAAATAATGCTTGGCTGCAAAGAAAAATTGTGGACTGGATATGGATTGTCGTATTTTTGTCATTGGCCGATCTGATTCTTCAGCGTTTTTAAAGAAAAGGTGGTCATTTTATCTCTTTAAGGTGTGATAAAAGGCCACAATACTATTTATTTGTTTATCCGTCTTGCAATATTATTTCCATTTCTTCTTCCAAAACCTATTGAGTCAACCTTCTTGGCTAGAATACAGGATAAAGTTTGCAACAGATAAATCCATGTTTTTTTCAATTCAATCTAGTGTATGTGTTATGCTTTCATCATTTTGTATATTTGCAAAGTAAATTGATATGACATTCAAATTATACTATCAGGCTCTGGTATTAATAATTTTTTTTTCAATTGGCAAATTGTTGATATATACTTTTTCACACTTCTTTTTTCTAGTATTTTGTTGAAGGATTTACGACTCCCTAACTATAGAATGATTGATCAGTTTTATTTAATTTCCACTTTTTCTTACTTTTGATGCCAGTAGCATTGGTAGTAGAAACTGTTCTCTTCATTGAACATTGAGGTGTCTGCCTCGGTATGGCAAATTTAAACTTCCTAACTGTTTTTGGTTATCTTGTAGTTTTAATTTACATAGCATTATCACAAGGTATGCTTACCTGTTGTGTATGCTCTCTAGATGTTCACTGGATTAAAATCCTCTCCACACACACTAATACAGCTGCTTGAAGGTGACCATGATGACGTATCAACATTTTACTTGTGAGATGAAACTAGATTGGGTTAAAAAGTTTCATTTTGCAAACTGGGGCACGTTTGTAAGTGCTAACTTGCAATGTAGTTTTATTTTCGAGCTTTGGTTGTGTTGGTAGTTAGAGGATTCTCTTAAATTTGTGGGTTGAGGCGAGTGAGAATATTTATTTCTCTTCTTTTCTGAGAAGAGCTCTTGGAGGCTTTTCTTTTGACTGCTGGATGTTAAGATTGTAAAAGCCGATTCAGATTATTTTAATGAGATCAACATTGCAGGAATTTTGGGTAAAGGAATCATCACATTTAGTGCAAAACATATTTTAATTCAATAAATAATGAAAGTTGCCATCTTTCCTTCTCCTTTTTTAAAAGGATATTAAAAATGTTGATTCTTTTTCTCCTTTGCTCGTTTGGGCAATTTTGTATTCATCTCTTTCTTGTTTAAGTTCCGATTGACGTTCTTCCTCACTGTAGTTTCTGTGGCAGAGCTTACCATTTAGGAAAATGCTATGGATATACAAGAATATACACCAAAAGATATTCAGGACCAATTAGATTTTTTTTTTTTTTTTGTAATTTT

Network for GWHGAAEX011556

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07800.11	DUF1644	49	100	1.00E-27
PF07800.11	DUF1644	105	191	2.70E-37

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.830
SRP064423	SRR2545915	Juvenile tuber	25.570
SRP108465	SRR5643513	five period of Gastrodia elata	29.440
	SRR5643514	five period of Gastrodia elata	26.330
	SRR5643515	five period of Gastrodia elata	28.840
	SRR5643524	five period of Gastrodia elata	25.660
	SRR5643525	five period of Gastrodia elata	34.600
	SRR5643528	five period of Gastrodia elata	27.210
	SRR5643658	five period of Gastrodia elata	28.450
	SRR5643659	five period of Gastrodia elata	31.380
	SRR5643660	five period of Gastrodia elata	31.630
	SRR5643661	five period of Gastrodia elata	33.510
	SRR5643662	five period of Gastrodia elata	40.050
	SRR5643663	five period of Gastrodia elata	34.450
	SRR5643664	five period of Gastrodia elata	39.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.940
SRP279888	Gastro	Gastrodia elata tuber	32.44
	Juven	Juvenile tuber	28.83
	Mother_Gastro	Mother tuber of Gastrodia elata	33.78
	Mother_Juven	Mother tuber of Juvenile	33.21