Detail information of GWHGAAEX011558/evm.TU.scaffold_38.138
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3495 | 3.00E-36 | Mitochondrial F1F0-ATP synthase, subunit epsilon/ATP15 |
| nr | gi|460392651|ref|XP_004241929.1| | 1.28E-38 | PREDICTED: ATP synthase subunit epsilon, mitochondrial [Solanum lycopersicum] |
| Swissprot | tr|Q96253|ATP5E_ARATH | 8.00E-37 | ATP synthase subunit epsilon, mitochondrial |
| trEMBL | tr|K4C753|K4C753_SOLLC | 5.00E-39 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g063220.2.1} |
| TAIR | AT1G51650 | 3.00E-36 | ATP synthase epsilon chain, mitochondrial |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 4003730 | 4014339 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011558
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04627.12 | ATP-synt_Eps | 9 | 56 | 1.90E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02135 | ATPeF1E, ATP5E, ATP15 | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 | ||
| Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015986 | Biological Process | ATP synthesis coupled proton transport |
| GO:0046933 | Molecular Function | proton-transporting ATP synthase activity, rotational mechanism |
| GO:0000275 | Cellular Component | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 66.110 |
| SRR2545915 | Juvenile tuber | 138.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 267.100 |
| SRR5643514 | five period of Gastrodia elata | 447.300 | |
| SRR5643515 | five period of Gastrodia elata | 314.760 | |
| SRR5643524 | five period of Gastrodia elata | 466.030 | |
| SRR5643525 | five period of Gastrodia elata | 184.730 | |
| SRR5643528 | five period of Gastrodia elata | 227.530 | |
| SRR5643658 | five period of Gastrodia elata | 175.510 | |
| SRR5643659 | five period of Gastrodia elata | 132.090 | |
| SRR5643660 | five period of Gastrodia elata | 115.570 | |
| SRR5643661 | five period of Gastrodia elata | 135.940 | |
| SRR5643662 | five period of Gastrodia elata | 112.850 | |
| SRR5643663 | five period of Gastrodia elata | 123.470 | |
| SRR5643664 | five period of Gastrodia elata | 115.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 150.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 371.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 187.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 118.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 101.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 98.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 101.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 109.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 173.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 143.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 261.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 261.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 165.12 |
| Juven | Juvenile tuber | 178.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 117.12 | |
| Mother_Juven | Mother tuber of Juvenile | 138.28 |