Detail information of GWHGAAEX011559/evm.TU.scaffold_38.139
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|408419366|ref|YP_006760780.1| | 2.00E-93 | spermidine synthase SpeE2 [Desulfobacula toluolica Tol2] |
| KOG | KOG1562 | 0 | Spermidine synthase |
| nr | gi|357119034|ref|XP_003561251.1| | 0 | PREDICTED: spermidine synthase 1 [Brachypodium distachyon] |
| Swissprot | tr|Q9SMB1|SPD1_ORYSJ | 0 | Spermidine synthase 1 |
| trEMBL | tr|I1H268|I1H268_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G52557.2} |
| TAIR | AT1G70310 | 0 | spermidine synthase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 4020005 | 4040943 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011559
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF17284.1 | Spermine_synt_N | 30 | 84 | 1.20E-24 |
| PF01564.16 | Spermine_synth | 87 | 274 | 2.10E-73 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00797 | speE, SRM | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 | ||
| Arginine and proline metabolism | map00330 | ||
| Glutathione metabolism | map00480 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006595 | Biological Process | polyamine metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.810 |
| SRR2545915 | Juvenile tuber | 60.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 108.900 |
| SRR5643514 | five period of Gastrodia elata | 111.690 | |
| SRR5643515 | five period of Gastrodia elata | 98.180 | |
| SRR5643524 | five period of Gastrodia elata | 95.520 | |
| SRR5643525 | five period of Gastrodia elata | 114.660 | |
| SRR5643528 | five period of Gastrodia elata | 124.940 | |
| SRR5643658 | five period of Gastrodia elata | 94.920 | |
| SRR5643659 | five period of Gastrodia elata | 90.270 | |
| SRR5643660 | five period of Gastrodia elata | 91.920 | |
| SRR5643661 | five period of Gastrodia elata | 91.940 | |
| SRR5643662 | five period of Gastrodia elata | 105.230 | |
| SRR5643663 | five period of Gastrodia elata | 103.100 | |
| SRR5643664 | five period of Gastrodia elata | 79.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 95.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 120.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 111.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 79.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 68.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 61.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 83.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 76.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 161.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 109.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 158.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 158.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 78.99 |
| Juven | Juvenile tuber | 101.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 94.16 | |
| Mother_Juven | Mother tuber of Juvenile | 101.47 |