Detail information of GWHGAAEX011560/evm.TU.scaffold_38.141
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743857813|ref|XP_010942214.1| | 0 | PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Elaeis guineensis] |
| Swissprot | tr|Q9SGH2|MBD9_ARATH | 0 | Methyl-CpG-binding domain-containing protein 9 |
| trEMBL | tr|W1PFR1|W1PFR1_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN05905.1} |
| TAIR | AT3G01460 | 0 | methyl-CPG-binding domain 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 4059655 | 4125118 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011560
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00628.28 | PHD | 80 | 127 | 1.00E-08 |
| PF01429.18 | MBD | 264 | 317 | 4.70E-06 |
| PF02791.16 | DDT | 776 | 821 | 4.20E-06 |
| PF00628.28 | PHD | 1299 | 1345 | 4.60E-12 |
| PF15612.5 | WHIM1 | 1380 | 1422 | 3.20E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DDT |
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.920 |
| SRR2545915 | Juvenile tuber | 10.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.060 |
| SRR5643514 | five period of Gastrodia elata | 4.680 | |
| SRR5643515 | five period of Gastrodia elata | 5.260 | |
| SRR5643524 | five period of Gastrodia elata | 4.970 | |
| SRR5643525 | five period of Gastrodia elata | 6.600 | |
| SRR5643528 | five period of Gastrodia elata | 4.920 | |
| SRR5643658 | five period of Gastrodia elata | 4.440 | |
| SRR5643659 | five period of Gastrodia elata | 6.020 | |
| SRR5643660 | five period of Gastrodia elata | 6.950 | |
| SRR5643661 | five period of Gastrodia elata | 5.720 | |
| SRR5643662 | five period of Gastrodia elata | 5.360 | |
| SRR5643663 | five period of Gastrodia elata | 5.370 | |
| SRR5643664 | five period of Gastrodia elata | 6.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.85 |
| Juven | Juvenile tuber | 8.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.49 | |
| Mother_Juven | Mother tuber of Juvenile | 12.62 |