Detail information of GWHGAAEX011561/evm.TU.scaffold_38.142


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG27446.00E-46DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain
nrgi|719990251|ref|XP_010252902.1|1.83E-69PREDICTED: high mobility group B protein 10 [Nelumbo nucifera]
Swissprottr|Q9LTT3|HMG10_ARATH1.00E-47High mobility group B protein 10
trEMBLtr|A0A067KWU9|A0A067KWU9_JATCU5.00E-66Uncharacterized protein {ECO:0000313|EMBL:KDP36314.1}
TAIRAT1G04880_16.00E-46Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004141641304186345+
Transcript Sequence

Network for GWHGAAEX011561

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01388.20ARID531358.30E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyARID

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.750
SRR2545915Juvenile tuber29.810
SRP108465SRR5643513five period of Gastrodia elata27.420
SRR5643514five period of Gastrodia elata24.470
SRR5643515five period of Gastrodia elata26.370
SRR5643524five period of Gastrodia elata28.510
SRR5643525five period of Gastrodia elata28.640
SRR5643528five period of Gastrodia elata30.970
SRR5643658five period of Gastrodia elata41.130
SRR5643659five period of Gastrodia elata33.570
SRR5643660five period of Gastrodia elata31.840
SRR5643661five period of Gastrodia elata26.300
SRR5643662five period of Gastrodia elata27.120
SRR5643663five period of Gastrodia elata28.760
SRR5643664five period of Gastrodia elata25.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.350
SRR6049655Rhizomagastrodiae_C368-T10_good_128.690
SRR6049656Rhizomagastrodiae_C368-T07_good_123.690
SRR6049657Rhizomagastrodiae_C368-T07_good_123.190
SRR6049658Rhizomagastrodiae_C368-T04_good_125.280
SRR6049659Rhizomagastrodiae_C368-T04_good_124.590
SRR6049660Rhizomagastrodiae_C368-T01_good_125.960
SRR6049661Rhizomagastrodiae_C368-T04_good_122.620
SRR6049662Rhizomagastrodiae_C368-T01_good_122.270
SRR6049663Rhizomagastrodiae_C368-T01_good_126.800
SRR6049664Rhizomagastrodiae_C368-T10_good_126.490
SRR6049665Rhizomagastrodiae_C368-T10_good_126.490
SRP279888GastroGastrodia elata tuber 35.29
JuvenJuvenile tuber34.66
Mother_GastroMother tuber of Gastrodia elata 22.13
Mother_JuvenMother tuber of Juvenile 23.96