Detail information of GWHGAAEX011563/evm.TU.scaffold_38.144


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|384209996|ref|YP_005595716.1|1.00E-1050S ribosomal protein L18 [Brachyspira intermedia PWS/A]
KOGKOG18703.00E-51Ubiquitin C-terminal hydrolase
nrgi|226496289|ref|NP_001152098.1|1.32E-5750S ribosomal protein L18 [Zea mays]
trEMBLtr|B6SMG7|B6SMG7_MAIZE5.00E-58Uncharacterized protein {ECO:0000313|EMBL:ACN26012.1, ECO:0000313|EnsemblPlants:GRMZM2G325749_P01}
TAIRAT5G278203.00E-51Ribosomal L18p/L5e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004142069454219660+
Transcript Sequence

Network for GWHGAAEX011563

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00861.21Ribosomal_L18p2943876.20E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms34.260
SRR2545915Juvenile tuber23.550
SRP108465SRR5643513five period of Gastrodia elata36.550
SRR5643514five period of Gastrodia elata37.460
SRR5643515five period of Gastrodia elata38.690
SRR5643524five period of Gastrodia elata35.860
SRR5643525five period of Gastrodia elata46.340
SRR5643528five period of Gastrodia elata46.900
SRR5643658five period of Gastrodia elata38.010
SRR5643659five period of Gastrodia elata43.810
SRR5643660five period of Gastrodia elata55.760
SRR5643661five period of Gastrodia elata53.940
SRR5643662five period of Gastrodia elata60.210
SRR5643663five period of Gastrodia elata47.580
SRR5643664five period of Gastrodia elata63.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.800
SRR6049655Rhizomagastrodiae_C368-T10_good_127.990
SRR6049656Rhizomagastrodiae_C368-T07_good_131.140
SRR6049657Rhizomagastrodiae_C368-T07_good_132.280
SRR6049658Rhizomagastrodiae_C368-T04_good_120.940
SRR6049659Rhizomagastrodiae_C368-T04_good_121.070
SRR6049660Rhizomagastrodiae_C368-T01_good_121.520
SRR6049661Rhizomagastrodiae_C368-T04_good_120.830
SRR6049662Rhizomagastrodiae_C368-T01_good_118.600
SRR6049663Rhizomagastrodiae_C368-T01_good_119.120
SRR6049664Rhizomagastrodiae_C368-T10_good_135.370
SRR6049665Rhizomagastrodiae_C368-T10_good_135.370
SRP279888GastroGastrodia elata tuber 28.25
JuvenJuvenile tuber43.41
Mother_GastroMother tuber of Gastrodia elata 38.21
Mother_JuvenMother tuber of Juvenile 56.63