Gene detail

Detail information of GWHGAAEX011565/evm.TU.scaffold_38.146

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695000469\|ref\|XP_009411905.1\|	9.11E-155	PREDICTED: protein MONOCULM 1-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9ZWC5\|SCL18_ARATH	1.00E-96	Scarecrow-like protein 18
trEMBL	tr\|M0S1A5\|M0S1A5_MUSAM	2.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P19470_001}
TAIR	AT1G55580	4.00E-96	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	4253319	4255194	+

Transcript Sequence
>GWHTAAEX011565 GGATATTATAGAGAGAGAGAGGAGGAGGTGGGGGGTGTTTGTGATCAGTCAGTCCATCAACATAGAGAAGCAGCTTCCAACACTCTCCTCTCTCTGCTTCTTTGGCAGATGTTGTCCTTTGAAGTTTTCATGTGTTATTATATTAAAGAAAAGGAATGCAAAACACTCCCCCCCATCTTCTTCCTTCCTCTCTTTCTCCTCCGGAGACACCACCACTTTATTCCTCCTCTCCTCAACAGCTCCCTCTTGCTGAAATGCTCACTTCACTCAAATCTAACGAAAAAGAGGAGGAGGAGCCAGCGGAGCGATCTTATTCGCACCAGCGGCTCCTCCTCCTCTGCGCCGAGCAAATCCACGGAGCGGACCTGGCGGGCACCCGTCGCACGCTCTCACTTCTTTCGGCAATGTCTTCGTCGTTGGGGGACTCAGCGGACCGCATCGCCCACCAATTCTCCCTCGCCCTCTCCCTCCGCCTCGACCGCCTCTCCCTCTTCCCTCGCCCGCTTTCTCCCGGCGACGAGGCCGCCCAATCCTCCTACCTCTCATTCAACCAAGTCACCCCTTTCCTCCGCTTCGCCCACCTCACCGCAAACCAAGCCATCCTCGAGGTCGTAAGCGGGCGGCGCCGCATCCACATCCTAGACTTCGACACCTCCCACGGCCTCCAGTGGCCTCCCTTTCTCCAAGCGGTGGCGGACCGCTCCGACCCTTCTGACCCCCCGTCGATCCGCATCACCGGCACGGGCTCCGACCTCTCCGTCCTCCGCCGCACTGCCTTCCGCCTCCACTCCTTCGCCGCCTCCCTGCGCCTCCCCTTCTCCTTCCACCCCCTCCTCGTCCCTCCGTCCGCCGATCCGTCGTCCGCCGCGTTCCGCCTGCGAGCCGGCGAGACCCTTGCCGTCAACTGCATCCACTTCCTCCACAACCTCCTCGGCTCCGACGGCGGCTTCCGCGATGCCCACGCCTTCCTCCGCTCCATCCGCGCTCTCAACCCGGAGGTGATGACTCTCTCAGAACGCGACGCGAGCCGCGGCTCCCCCGCGTTCAAGGACAGGTTCGCCGACGCGCTGGAGCACTACACAGCCTTGTTCGAGTCACTCGAGGCGACACTCCCACCGACCAGCCGAGAGAGACTGGCTGTCGAGAGGGTCTGGCTCGGGAGGGAGATCGCCGGCATTGTGGCAGGCGATGACCGCCACGAGCCGTTCGATCGGTGGGAGGAGATGATGAGGGCCGCCGGATTCAAGCCCGAGCCCCTCAGCGCATTCGCCATATCGCAGGCGAGGCTGCTGCTGCGCCTGCACTACCCCGCCGAAGGATACAAGCTTCAGGCGCTGAGGGGCTCCTGCTTCCTCGGCTGGAAAAGCAAGTCTCTCTTCTCGGTTTCTTCTTGGCGCTGCAATTGATTTACGCCAGGCCTCTAAATATATATATCAGCATCAACCAGGATCGAATTCACTAGTATCAGCCTTGAGAATTTTCGACGGAGCTCGTCTCCCTAATGCAAGGATCAAGCCTCTCTTCTCTGCTTCCTCTTGACGCTGCAATTAACTCACGCTCCTGAAAACCGGCCAGGGCCTACATATATATATTATATATCAAACATCAACTATCGTACATTAACCGGGATCAAATTTATCAGTATCATCCCTGAGGGTTTTCGAAAACCTACTACGGAGCTCGTATTCCTAATGCTAGGATAACTCATTCATAGTAATAATAATGCTTTTTATCTTGATGTTAGATTGAAGTTTTATGCTGTGAAGGCACGCAGTCTGCAAACCCTAACCCTAGCTTCGGATCAGATGGAAATATTTGGCTCCGGACGTTGCATGGAGAATAAAAAACTAAGGGAGAGGAATGAATAGGTATAGTT

Network for GWHGAAEX011565

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	57	414	1.60E-107

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.120
SRP064423	SRR2545915	Juvenile tuber	0.190
SRP108465	SRR5643513	five period of Gastrodia elata	0.510
	SRR5643514	five period of Gastrodia elata	0.190
	SRR5643515	five period of Gastrodia elata	0.320
	SRR5643524	five period of Gastrodia elata	0.320
	SRR5643525	five period of Gastrodia elata	0.160
	SRR5643528	five period of Gastrodia elata	0.210
	SRR5643658	five period of Gastrodia elata	0.030
	SRR5643659	five period of Gastrodia elata	0.590
	SRR5643660	five period of Gastrodia elata	0.300
	SRR5643661	five period of Gastrodia elata	0.120
	SRR5643662	five period of Gastrodia elata	0.380
	SRR5643663	five period of Gastrodia elata	0.550
	SRR5643664	five period of Gastrodia elata	0.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.970
SRP279888	Gastro	Gastrodia elata tuber	0.61
	Juven	Juvenile tuber	1.01
	Mother_Gastro	Mother tuber of Gastrodia elata	0.43
	Mother_Juven	Mother tuber of Juvenile	0.59