Gene detail

Detail information of GWHGAAEX011568/evm.TU.scaffold_38.151

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1721	7.00E-136	FOG: Zn-finger
nr	gi\|672158091\|ref\|XP_008798774.1\|	3.16E-164	PREDICTED: protein TRANSPARENT TESTA 1-like [Phoenix dactylifera]
Swissprot	tr\|Q9SVY1\|ZWIP2_ARATH	2.00E-136	Zinc finger protein WIP2
trEMBL	tr\|B9SL66\|B9SL66_RICCO	2.00E-153	TRANSPARENT TESTA 1 protein, putative {ECO:0000313\|EMBL:EEF35649.1}
TAIR	AT3G57670	7.00E-136	C2H2-type zinc finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	4419288	4421676	-

Transcript Sequence
>GWHTAAEX011568 CTCATTTTCTCACTTTCCCATCCCTCTTTATCCTCTCATCCATATCTCTCTCCCCCACAAAATTCTTCCCTTGAAGCTCACAAAGAGCAGCCATGGCTGACCCCTACTCCAACTTCTTCAAGAGGCACTACTCCTATTATGCCTTTTCACCATCATCCAATCCTTCTCCTCCTCCTCAGCCCTCACCTCCAGTGCCTCACCCTTCCTTCAACTTCTACACAAACTACAACTACTTCTTCAATCCCACCCTCCAATCCCCCCCTCCCTCCCCTCCGCTCAGAGAGGCCCTTCCCCTCCTCAGACTCAGCGACGAAAAGCCCCCCTCCTTCACCGTCCCGAGCAACAACGCCGAAAACGACGAAGATGCCGTGACAGTCGCCCTCCACATCGGCCTGCCGAGCCCCGCCGCTGCCGATCTCATCTCCAGAATCTCCTCCGCTGCCGTCGACGACGGCCGCGATGTGGACGACGACGACGAGGAGGAGGAGGAGGACGGGAACAACAGCGCTAACAGCGCTCGTGCCTTCCCGCCTCTCGGCTGCCCTACTATCGGCAAGCTCACTAAAGGCCAGTACTGGATCCCTACCCCTTCCCAAATCCTCATTGGCCCCACTCAGTTCTCTTGCCCAGTCTGCTGCAAAACCTTTAACAGATACAATAACATGCAGATGCACATGTGGGGGCACGGGTCACAGTACCGAAAAGGGCCGGAGTCTTTGAGGGGCACGCAGCCGACAGCAATGCTGCGTCTTCCGTGCTACTGCTGCGCCCCCGGGTGCCGCAACAACATCGACCACCCGAGGGCGAAGCCGCTCAAGGACTTCCGCACCCTCCAGACGCACTACAAGCGCAAGCACGGGATAAAGCCGTTCATGTGCCGCAAATGCGGAAAGGCTTTCGCCGTTCGCGGCGACTGGAGGACTCACGAGAAGAACTGCGGGAAGCTCTGGTACTGCACTTGCGGCTCCGACTTCAAGCACAAAAGGTCACTCAAGGATCACATCAAGGCCTTCGGTAACGGCCATGCGGCTTACGGCATTGATTGTTTCGAGGAGGAAGAGGATCCGGCGTCGGAGATCGAGCAAGATGCTGGAGCCAGGCGATAGGTTGTTTTGATCTGGTGGATATTAGTAGGTATTTAGTTTTATGGAAGAGTTTATATGATATTGAGAATTTGACATGGTTATGGATGAATGTGAATTGGCTAGTTAAATATTTTCTATATGGGATATTGGAAATGGATACAAGTTACAAGAGTTATGCCTGTAAAGGAAAAGGATTAGTTTTGGTTCATTAATGCTTCTTTTGGGTTTTTGTTTGAGGGACTATCACACAACTGGGTTTTTGCTTATAAAGGAACATTCAAGGCTATTTATTGCCCTAATCTTTAACTGAATGCAACGAGTTGGAATATAGTTTAATTAAATTTTGATTAGAATTTCTATTGATTGTGGTTATGC

Network for GWHGAAEX011568

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.250
SRP108465	SRR5643513	five period of Gastrodia elata	0.400
	SRR5643514	five period of Gastrodia elata	0.470
	SRR5643515	five period of Gastrodia elata	0.050
	SRR5643524	five period of Gastrodia elata	0.420
	SRR5643525	five period of Gastrodia elata	0.110
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.090
	SRR5643660	five period of Gastrodia elata	0.050
	SRR5643661	five period of Gastrodia elata	0.050
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.030
SRP279888	Gastro	Gastrodia elata tuber	0.02
	Juven	Juvenile tuber	0.34
	Mother_Gastro	Mother tuber of Gastrodia elata	0.27
	Mother_Juven	Mother tuber of Juvenile	0.26