Detail information of GWHGAAEX011573/evm.TU.scaffold_38.156
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146295422|ref|YP_001179193.1| | 1.00E-24 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| nr | gi|586703127|ref|XP_006845389.1| | 3.54E-117 | hypothetical protein AMTR_s00019p00055210 [Amborella trichopoda] |
| Swissprot | tr|Q6H9K0|PGLR2_PLAAC | 4.00E-100 | Exopolygalacturonase (Precursor; Fragment) |
| trEMBL | tr|W1PH95|W1PH95_AMBTC | 1.00E-117 | Uncharacterized protein {ECO:0000313|EMBL:ERN07064.1} |
| TAIR | AT4G18180 | 2.00E-96 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 4506796 | 4508789 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011573
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00295.16 | Glyco_hydro_28 | 83 | 386 | 2.60E-85 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01213 | E3.2.1.67 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004650 | Molecular Function | polygalacturonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.310 |
| SRR2545915 | Juvenile tuber | 0.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.480 |
| SRR5643514 | five period of Gastrodia elata | 0.240 | |
| SRR5643515 | five period of Gastrodia elata | 0.100 | |
| SRR5643524 | five period of Gastrodia elata | 0.180 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.050 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.130 | |
| SRR5643660 | five period of Gastrodia elata | 0.090 | |
| SRR5643661 | five period of Gastrodia elata | 0.050 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.03 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.06 | |
| Mother_Juven | Mother tuber of Juvenile | 0.20 |