Detail information of GWHGAAEX011575/evm.TU.scaffold_38.158
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209883569|ref|YP_002287426.1| | 3.00E-35 | heat shock protein GrpE [Oligotropha carboxidovorans OM5] |
| KOG | KOG3003 | 2.00E-74 | Molecular chaperone of the GrpE family |
| nr | gi|743821559|ref|XP_010932064.1| | 1.10E-115 | PREDICTED: grpE protein homolog, mitochondrial-like isoform X1 [Elaeis guineensis] |
| trEMBL | tr|M5WTU3|M5WTU3_PRUPE | 5.00E-97 | GrpE protein homolog {ECO:0000256|RuleBase:RU000640} |
| TAIR | AT4G26780 | 2.00E-74 | Co-chaperone GrpE family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 4510925 | 4535314 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011575
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01025.18 | GrpE | 165 | 331 | 6.90E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0000774 | Molecular Function | adenyl-nucleotide exchange factor activity |
| GO:0051087 | Molecular Function | chaperone binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 67.860 |
| SRR2545915 | Juvenile tuber | 71.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.810 |
| SRR5643514 | five period of Gastrodia elata | 33.700 | |
| SRR5643515 | five period of Gastrodia elata | 26.650 | |
| SRR5643524 | five period of Gastrodia elata | 29.220 | |
| SRR5643525 | five period of Gastrodia elata | 13.410 | |
| SRR5643528 | five period of Gastrodia elata | 13.570 | |
| SRR5643658 | five period of Gastrodia elata | 8.280 | |
| SRR5643659 | five period of Gastrodia elata | 41.200 | |
| SRR5643660 | five period of Gastrodia elata | 41.310 | |
| SRR5643661 | five period of Gastrodia elata | 41.450 | |
| SRR5643662 | five period of Gastrodia elata | 41.470 | |
| SRR5643663 | five period of Gastrodia elata | 37.170 | |
| SRR5643664 | five period of Gastrodia elata | 34.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 65.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 39.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 54.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 54.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.21 |
| Juven | Juvenile tuber | 48.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.57 | |
| Mother_Juven | Mother tuber of Juvenile | 25.14 |