Gene detail

Detail information of GWHGAAEX011576/evm.TU.scaffold_38.159

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|260893757\|ref\|YP_003239854.1\|	4.00E-34	DNA mismatch repair protein MutL [Ammonifex degensii KC4]
KOG	KOG1977	4.00E-93	DNA mismatch repair protein - MLH3 family
nr	gi\|672187427\|ref\|XP_008813336.1\|	1.46E-142	PREDICTED: uncharacterized protein LOC103723997 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|F4JN26\|MLH3_ARATH	1.00E-99	DNA mismatch repair protein MLH3
trEMBL	tr\|W5FTI9\|W5FTI9_WHEAT	1.00E-127	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5DL_584FFBACE.1}
trEMBL	tr\|W5FTI9\|W5FTI9_WHEAT	1.00E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5DL_584FFBACE.1}
TAIR	AT4G35520	4.00E-93	MUTL protein homolog 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	4539614	4683962	-

Transcript Sequence
>GWHTAAEX011576 GCCGACATTCGGATAACATCACCTGACAATATATCGTTTGCGATAGAGTTCTCTGTGTTCATTCTCCCGAAGCTCGCATTCGCTTCGTCTCGTCGACAACTCGGATCCTTGACTCCTCATTTGACGCACTCACTTCGCTACACATTCACTCGATGCAGCTCGCCAAGCACACAGGCACCACTTAATTTCTCCTGCAAAATCCTTCTACCTTGAACTGTCCCGCCACAACTTCTCGCTTTCGTGAAAGCTTGCGATTCTTGATAGGTGCAAGGGTTAAAACTTGGAAGACTAGGGTTGTAAACATTATCGGGTCTCATGCAAAAAAGTATATATGTCAAATAAAGGGATACAACGCTTGTCACGCAATGTGCATGATTCGTTGCGCTCAAGCACATTTTTGTTTGACTTGTCCAGAGTTGTCGAAGAGATTGTTTATAATAGTGTGGATGCGGGTGCTACCAAGGTGTTTGTCTCCTTAAGTGTTAAATCATGCTACATTAAAGTAGAGGATGATGGATGTGGTATTACTCGAGATGGATTGGTTATTATGGGTGAAAGATATGCTACATCAAAGGTTCACCTTGTGGCTAATGTCGGTACTAGCACGGAAACCCTTGGTTTTAGAGGAGAGGCACTGTCTTCCATTTCTGATGTTTCAGTATTAGAAATTAAGTCAAAAGCTTGTGGAAAGCCAAATGCATATTGCAAGATCATAAAGAATTCAAAGTGCTTACTTTTTGAAATTGATGATCAGAGGGAAGATGTAGGTACTACTGTAATTGTTCGAGATTTATTTTATAATCAACCAATTCGGAGGAAACTCATGCACTCTAGACTTGTAAAGGAACTGCATTCTGTGAAAAAATGTGTGCTTCGAATAGCCCTTGTGCATCCACAAGTATCATTCCAGGTTATTGAAATTGAGGGTGAGCGTAAGCTGCTTTGCACAATTCCTTACCCGTCTTCTTTGCCTTTGGTGACTGATGGTTTTGGAAACGAAGTTTCTAGTTTACTCCGTGAATTTGCTTACTCATTCAGTGAACTTACCCTTTCTGGGTATTTATCAGGGCCAACGGATGTAGTTTCAACAAAGGCAATCCAGTACATCTATATCAATGCGAGATTTGTCTGCAAGGGTCCAATCCATAATTTGATTAATGGCATTGCAACAAATTTTCAATCCCTTATTACTAAGTTTAAGGATTGCTCTGAAAGTCACTGTAGAAAGCGACAGAAAACTCAAGGATATCCAGCATATTTGCTTAATTTTTGCTGTCCCATGTCAATCTACGATCTAAGTTTTGAGCCTTCAAAGACAAAAGTTGAATTCAAGGATTGGGGCAAAGTTCTATCTTTCTTTGAGGAAGCCATCAATTCATACTGGAAACAGTCTGTATCAAATCCATTGCAAGGGAAAAGTGTTGTCTGTGAAGCTTCCTTTCATGAAAGTGATATACTGAAAGAAGTTAAATCAGAACGCTGTTCAACTAGGCATATGTTTGGTGAACATCAAGATCTTTTCAAGGAACCTTTTTTAGATAAAGGTTGGACTAATAATGTAAAATGGTGTAACCATGCTTTACATGGCAGTGAAGATCTTAGTCCAAAGGAGAATATCTGCAATTCTTTTCTTCAAGAAAGAATGAACTCACAATTACCTGTGCTTGGTGCTCTTAGAAAATGCCAGAAGTGGACTAATAAAGATTCACATTCCAGCTTTGAAATTGGCCCTTTGCTTTTCGACCAGGCATGCTTAACTGAGGTAAATAGCCCTAGCTATCAAAAAGTTGCAGGCAATGTTGACTCGGGCTCCAAATTAGGGTGTTCTCATTTTGATCTCCAGAATCCTTGGATTTCTAGGACACCTCCAAGGAGCCAGGATAATTTGTGTGATTCTACCTTGATAGAGGATCACACATATCTACAAGGTTTTGGTTGCAAGCATTGTTCTATTGATGAGCCGAATGCTGAGTTTCTCAGCTCTCTTTTGAATGAATCCTCCTGCTGTGTAACAGATAATAGATTTTGCTCTAGTTCTTTGAAGTATGTCCAGAACGACAGTTCCTTAGATCAATTCATGCTCACAGAAGATAGTTTAACCTCCATCATAAATGAAGAAAAATGCAGCTTTCTGCCCGATTCTTCAAGCCTTAGAGACATTTATAGCACCCGTCAATTAAATTTTGCTATGCAAAGTTATGATTATGCTATTGAAGGCCTTTCCAATGTTCGGAGGTTAAGACTTCTTTCTACTCCAAGGAGAAGTCATTCTGCCCCACCTTTTTATAAAGGAAAAAAGAAGTTCCCCATCTTAAATTGTCTTCCAACAGTTTACTTTAAAGAAAATTTCAAAATGAAGTTATTTCATGGTGTTGATAAGCCAGGATTAACATGTCAGCTTGAGCCTTATAGTGCGCCACAGCCTTGTACGAAGACTATTACTGGGCTTAGACGGTCATATGAAAGGGAATTCTTTTATGAGAAGTCAAATTCGAGCAGCACGATTGAACAGAATCGTGAAGACTTTGATAACGGATCTGTCGCTGCTGATGAAATGGATCTTGCATCATCTTCTCTGTCAAAGTGGCGAACCAGCATCCGTCTGCCAGATGCTGTCATGCCACAAAAGGTTGATGTACTAGACATATCTTCCGGATTCTTACATCTTGCTGGTAGTTCATTGGTGCCTTCTTTCATAAATAAGGATTGCCTTGATAATGCAATGGTTTTACGACAACTGGATCGCAAATTTATTCCAGTAGTTGCAAGTGGAATTCTTGTAATTATTGATCAGCATGCTGCAGATGAAAGGATAAGACTTGAAGAGTTGCGTAAAAAGGTTTTGCATGGGGAGCTGCGCAGCACTACTATTTTTAATCCAGAGCTTGAACTTGCTCTTCCAGAGATGGGATACCAACTGCTTCAAAAATATGCAGAGCAGATAAATAAATGGGGTTGGATATGCAACATTCACAATCCATGTTCAGAGTCAATTTCAATTATTTACACTGAAAATGGAAATGCAAAGGTGGCATCAAAAGGAGAATCAGCATCTAATTATATGAGCATGGACATTCTAAGGCAACAGAAATGCAGAGCCACCCTTGTCTCCGTGCCACATATTTTAGGTATTGATTTAACAAGTAAAGATCTGCTAGAATATATCGATCAGCTGGTTGAAACGGACGGATCATCCATGATTCCACCAGCAGTGCTTCGTCTACTGAATTATAAAGCCTGCAGAGGTGCCATCATGTTTGGAGATGCTCTTCTGCCTTCAGAATGCTCCCTCATCGTTGAAGAACTAAAAGCCACATCTTTGTGCTTCCAGTGTGCCCATGGCCGGCCAACCACTGTTCCTCTCCTTGATATGCTCGCCCTGCACGAGCATTTAGCCAAGATCGGAGCGTCGAACGAGTGGCATGGGCTGCAGCGGCACGCTCCAAGCATCCACCGCGCACAACAAAGGCTAGAATCCTGCAAAAGGTTTGTTCACTGATATGATTGATCGTGCCTTCTTAATCATGCAGATAGCTTTTTCTTCTTGCGATGTGATATGTATATGGAAATGATTTATGTGATGTACATAACATTCAGTTTATGCAGAAAATTGTATGTATTTTCTTGGCAAAATGTATTCTTTGATGATTTGGCCATCACGATGTATAAAGTCTTTCCTACTGTTTTCCTTTTTATTATATATTTTGAGAC

Network for GWHGAAEX011576

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13589.5	HATPase_c_3	28	124	1.40E-06
PF01119.18	DNA_mis_repair	220	349	8.80E-11
PF08676.10	MutL_C	799	876	2.50E-08

Protein Sequence

>GWHPAAEX011576
MSNKGIQRLSRNVHDSLRSSTFLFDLSRVVEEIVYNSVDAGATKVFVSLSVKSCYIKVEDDGCGITRDGLVIMGERYATSKVHLVANVGTSTETLGFRGEALSSISDVSVLEIKSKACGKPNAYCKIIKNSKCLLFEIDDQREDVGTTVIVRDLFYNQPIRRKLMHSRLVKELHSVKKCVLRIALVHPQVSFQVIEIEGERKLLCTIPYPSSLPLVTDGFGNEVSSLLREFAYSFSELTLSGYLSGPTDVVSTKAIQYIYINARFVCKGPIHNLINGIATNFQSLITKFKDCSESHCRKRQKTQGYPAYLLNFCCPMSIYDLSFEPSKTKVEFKDWGKVLSFFEEAINSYWKQSVSNPLQGKSVVCEASFHESDILKEVKSERCSTRHMFGEHQDLFKEPFLDKGWTNNVKWCNHALHGSEDLSPKENICNSFLQERMNSQLPVLGALRKCQKWTNKDSHSSFEIGPLLFDQACLTEVNSPSYQKVAGNVDSGSKLGCSHFDLQNPWISRTPPRSQDNLCDSTLIEDHTYLQGFGCKHCSIDEPNAEFLSSLLNESSCCVTDNRFCSSSLKYVQNDSSLDQFMLTEDSLTSIINEEKCSFLPDSSSLRDIYSTRQLNFAMQSYDYAIEGLSNVRRLRLLSTPRRSHSAPPFYKGKKKFPILNCLPTVYFKENFKMKLFHGVDKPGLTCQLEPYSAPQPCTKTITGLRRSYEREFFYEKSNSSSTIEQNREDFDNGSVAADEMDLASSSLSKWRTSIRLPDAVMPQKVDVLDISSGFLHLAGSSLVPSFINKDCLDNAMVLRQLDRKFIPVVASGILVIIDQHAADERIRLEELRKKVLHGELRSTTIFNPELELALPEMGYQLLQKYAEQINKWGWICNIHNPCSESISIIYTENGNAKVASKGESASNYMSMDILRQQKCRATLVSVPHILGIDLTSKDLLEYIDQLVETDGSSMIPPAVLRLLNYKACRGAIMFGDALLPSECSLIVEELKATSLCFQCAHGRPTTVPLLDMLALHEHLAKIGASNEWHGLQRHAPSIHRAQQRLESCKRFVH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08739	MLH3	Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006298	Biological Process	mismatch repair
GO:0005524	Molecular Function	ATP binding
GO:0030983	Molecular Function	mismatched DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.860
SRP064423	SRR2545915	Juvenile tuber	4.820
SRP108465	SRR5643513	five period of Gastrodia elata	2.870
	SRR5643514	five period of Gastrodia elata	4.800
	SRR5643515	five period of Gastrodia elata	3.180
	SRR5643524	five period of Gastrodia elata	3.260
	SRR5643525	five period of Gastrodia elata	1.500
	SRR5643528	five period of Gastrodia elata	3.050
	SRR5643658	five period of Gastrodia elata	2.160
	SRR5643659	five period of Gastrodia elata	4.080
	SRR5643660	five period of Gastrodia elata	3.910
	SRR5643661	five period of Gastrodia elata	4.540
	SRR5643662	five period of Gastrodia elata	6.210
	SRR5643663	five period of Gastrodia elata	4.550
	SRR5643664	five period of Gastrodia elata	5.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.470
SRP279888	Gastro	Gastrodia elata tuber	8.70
	Juven	Juvenile tuber	5.43
	Mother_Gastro	Mother tuber of Gastrodia elata	3.15
	Mother_Juven	Mother tuber of Juvenile	3.57