Detail information of GWHGAAEX011578/evm.TU.scaffold_38.161
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428776196|ref|YP_007167983.1| | 9.00E-34 | sodium/proton antiporter [Halothece sp. PCC 7418] |
| KOG | KOG1965 | 0 | Sodium/hydrogen exchanger protein |
| nr | gi|743767430|ref|XP_010913977.1| | 0 | PREDICTED: sodium/hydrogen exchanger 6-like [Elaeis guineensis] |
| Swissprot | tr|Q8RWU6|NHX6_ARATH | 0 | Sodium/hydrogen exchanger 6 |
| trEMBL | tr|V4KIS9|V4KIS9_EUTSA | 0 | Sodium/hydrogen exchanger {ECO:0000256|RuleBase:RU003722} |
| TAIR | AT1G54370 | 0 | sodium hydrogen exchanger 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 4684508 | 4732963 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011578
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00999.20 | Na_H_Exchanger | 33 | 436 | 6.30E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0006885 | Biological Process | regulation of pH |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006814 | Biological Process | sodium ion transport |
| GO:0015385 | Molecular Function | sodium:proton antiporter activity |
| GO:0015299 | Molecular Function | solute:proton antiporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.590 |
| SRR2545915 | Juvenile tuber | 25.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.510 |
| SRR5643514 | five period of Gastrodia elata | 22.330 | |
| SRR5643515 | five period of Gastrodia elata | 22.240 | |
| SRR5643524 | five period of Gastrodia elata | 22.080 | |
| SRR5643525 | five period of Gastrodia elata | 25.760 | |
| SRR5643528 | five period of Gastrodia elata | 21.050 | |
| SRR5643658 | five period of Gastrodia elata | 24.890 | |
| SRR5643659 | five period of Gastrodia elata | 17.210 | |
| SRR5643660 | five period of Gastrodia elata | 20.470 | |
| SRR5643661 | five period of Gastrodia elata | 17.130 | |
| SRR5643662 | five period of Gastrodia elata | 18.450 | |
| SRR5643663 | five period of Gastrodia elata | 17.680 | |
| SRR5643664 | five period of Gastrodia elata | 18.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.12 |
| Juven | Juvenile tuber | 27.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 39.69 | |
| Mother_Juven | Mother tuber of Juvenile | 41.36 |