Detail information of GWHGAAEX011580/evm.TU.scaffold_38.163
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294506682|ref|YP_003570740.1| | 0 | Bifunctional aspartokinase/homoserine dehydrogenase II [Salinibacter ruber M8] |
| nr | gi|672164109|ref|XP_008801921.1| | 0 | PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P49079|AKH1_MAIZE | 0 | Homoserine dehydrogenase (Precursor) |
| trEMBL | tr|M0SSS8|M0SSS8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P28160_001} |
| TAIR | AT4G19710 | 0 | aspartate kinase-homoserine dehydrogenase ii |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 4760440 | 4821175 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011580
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00696.27 | AA_kinase | 99 | 380 | 5.30E-44 |
| PF01842.24 | ACT | 427 | 477 | 5.10E-07 |
| PF13840.5 | ACT_7 | 497 | 560 | 5.60E-07 |
| PF03447.15 | NAD_binding_3 | 575 | 711 | 1.10E-24 |
| PF00742.18 | Homoserine_dh | 719 | 917 | 4.70E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006520 | Biological Process | cellular amino acid metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0008652 | Biological Process | cellular amino acid biosynthetic process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0050661 | Molecular Function | NADP binding |
| GO:0004072 | Molecular Function | aspartate kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.150 |
| SRR2545915 | Juvenile tuber | 14.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.800 |
| SRR5643514 | five period of Gastrodia elata | 18.280 | |
| SRR5643515 | five period of Gastrodia elata | 16.080 | |
| SRR5643524 | five period of Gastrodia elata | 19.020 | |
| SRR5643525 | five period of Gastrodia elata | 10.740 | |
| SRR5643528 | five period of Gastrodia elata | 9.820 | |
| SRR5643658 | five period of Gastrodia elata | 11.090 | |
| SRR5643659 | five period of Gastrodia elata | 11.890 | |
| SRR5643660 | five period of Gastrodia elata | 15.260 | |
| SRR5643661 | five period of Gastrodia elata | 13.710 | |
| SRR5643662 | five period of Gastrodia elata | 15.380 | |
| SRR5643663 | five period of Gastrodia elata | 15.500 | |
| SRR5643664 | five period of Gastrodia elata | 15.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.38 |
| Juven | Juvenile tuber | 21.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.16 | |
| Mother_Juven | Mother tuber of Juvenile | 15.11 |