Gene detail

Detail information of GWHGAAEX011587/evm.TU.scaffold_38.170

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2262	7.00E-133	Sexual differentiation process protein ISP4
nr	gi\|225461975\|ref\|XP_002267184.1\|	2.12E-150	PREDICTED: oligopeptide transporter 1-like [Vitis vinifera]
Swissprot	tr\|Q9FG72\|OPT1_ARATH	2.00E-133	Oligopeptide transporter 1
trEMBL	tr\|D7UAK7\|D7UAK7_VITVI	6.00E-149	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39772.3}
TAIR	AT5G55930	7.00E-133	oligopeptide transporter 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	4994290	4996520	+

Transcript Sequence
>GWHTAAEX011587 AAAAAAAAAAAAAAAATCTATTAATCCTACTAACAAACTTATTAGGTAATGACAAACTGCGCCTTCTTAATAAAAAATTGCAGAATGACCACCCGATAGAGGAGGTGAGGCTGATAGTGGACCCATACGACAACCCAAAGATTCCGGTGCTGACAATCAGGGCGTGGGTGCTGGGCGTGGCCTCATGCGCGCTGCTCTCCTTCGTCAACATGTTCTTCGCCTACAGATCGAATCCGCTCTCGATCGGGTCCGTGTGTGCGCAAATCGTGACTCAGACATGGTTCTATATCCTGTTGATAATAGTGATTGCTATATCCATATATACATGCGAGGGATTTCATGGGCAATTGCAGCTCCCTTGGTGGGGTGTTTTACTGGCTTGTGCGATGGCCCTGTTTTTCACCCTTCCAATTGGCGTCATTCTCGCTACCACAAACCAGGCACCAGGACTCAACCTCATTACAGAGTACTTAATCGGTTTGATCTTGCCGGGAAAACCTCTTGCCAACGTTACATTCAAGACATATGAGACTATCAGCATGTCCCAAGCACTCACACTTCTCAGCGATCTGAACTTGGGCAGATATATGAAGATCCCGCCCAAGTCCATGTTCATCGCACAGTTGGCAGGAACGATGATAGCATCTTCAGTCTACTTCGGAACTGCGTGGATGCTTCTAGAGAACGTGGAGAATATATGCGACGCGAGCAGGCTGCCCACGGACAGCCCGTGGACTTGTCCCGGCGACGATGTCTTCTTCAACGCGTCCATCATTTGGGGGCTTGTCGGGCCGAAGAGAATGTTCGGAAAGCTGGGGCGCTACAGCGCATTGAACTTGCTCTTCCTTATAGGGCTTGTGCTGCCCATCCCCTTCTGGCTTCTCGGAAGGGCCTTTCCCAACAGCAGGGTGCTGAGGCACATTCCGCTCATCGTGTCGGGCGCCGGCAGCATCCCGCCCGCGCACGCCGTGAATTACATTATGTGGGGGGCCGTCGGAATTTTCTTCAACTATTACGTGTACAAGGGCTACAAGAAATGGTGGGTGAAGCACACTTACGTCATGTCGGCTGCTCTTGACGCCGGGGTCGCCTTCATGGCAGTTGTTCTCTTCTTTGCTCTGCAAACGCATGGCATTGGAGGGATAAAATGGTGGGGCGATGGAGGGGATTATTGTGACATTGCTAGATGCCCCACAGCATTTGGGGTGCTCGCTCCTGGCTGCCCAGTTTATTGAAGCTACCCCATTGGATCGGGTAAATGAATAACTCATATAATTCCTTTCATCTGTACAAATGCAAGTATGAATATGTTTTGCGTGCTGTTTCTACTTATATAATTATAAGTATAAGTTCTAGATAATTCCATGCACTAATATAAATAGGCATCGTCTCTAGAGATATTAGGGAGATTATTGAATAAGGCTATGCTGAGCAACGCATCATTAACAATGGTCCAAAGGGATTCATTGAAGGAAAATCGAAAGAAAGATATGTTCTTTCTCATATATCAACCATATGTCTATTGAAGAGGAGCAAAGAAAAATAAGAAACACAAAAACCAATTGAAAAAGAGGTCAATAGCCATGAAAATTCAAATGCAACTACGGCATTAAGTTAGTTGAGGTAGTTATGGGAGAGGTCCAGGGCGAGGAGGTCAACAAGGAGGACATCCTTACTCTACTTCGGAACCGCATTGTTGCTTTTAGAAAATGTGAACAATAAATGTGACCCGAACAAGCTGGAACCTGCAGACCTGCCCCACAGAGAGCATTTTCTTCAACGCACTCAATCATTTGGCGGCTTGTCAGATCTAAGAGAATGTTTGGCAAGCTTGAGCATTACAACACTTTGAGCTTGCTTTTCCCTGTGCGTTGAATGCCCTACCCATAGAGCAAATAGTCATGGTTTTTCCCAACAACACGCTGCTGAGACATTCACAATCCTCTCACTGTGTTAGGCGCCGGCACTATTCCACCCGCCCAAACCACAAATTACATCATGTGGGGAGATGTCGGCACTTGGTTCAACTATCATGCCTACAAGAACTACAATAAATGGTGGGATCCAAAGCAATTTCATCCAAGCACACAGCCCATACCGTCTTCAAAGTACATGCACTCTCGCTTATCAGCGATTTTTAAATCTACATCACTGCATGAAGAT

Network for GWHGAAEX011587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03169.14	OPT	20	303	1.20E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.690
SRP064423	SRR2545915	Juvenile tuber	5.890
SRP108465	SRR5643513	five period of Gastrodia elata	4.470
	SRR5643514	five period of Gastrodia elata	5.090
	SRR5643515	five period of Gastrodia elata	5.450
	SRR5643524	five period of Gastrodia elata	5.400
	SRR5643525	five period of Gastrodia elata	7.600
	SRR5643528	five period of Gastrodia elata	8.000
	SRR5643658	five period of Gastrodia elata	8.240
	SRR5643659	five period of Gastrodia elata	2.390
	SRR5643660	five period of Gastrodia elata	3.600
	SRR5643661	five period of Gastrodia elata	1.410
	SRR5643662	five period of Gastrodia elata	3.490
	SRR5643663	five period of Gastrodia elata	6.570
	SRR5643664	five period of Gastrodia elata	2.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.300
SRP279888	Gastro	Gastrodia elata tuber	4.65
	Juven	Juvenile tuber	12.95
	Mother_Gastro	Mother tuber of Gastrodia elata	6.79
	Mother_Juven	Mother tuber of Juvenile	19.23