Gene detail

Detail information of GWHGAAEX011588/evm.TU.scaffold_38.171

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|110638796\|ref\|YP_679005.1\|	2.00E-07	RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
KOG	KOG0118	6.00E-83	FOG: RRM domain
nr	gi\|743859928\|ref\|XP_010942879.1\|	2.20E-108	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Elaeis guineensis]
Swissprot	tr\|Q8W034\|RNP1_ARATH	6.00E-47	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|C5XR18\|C5XR18_SORBI	6.00E-108	Putative uncharacterized protein Sb03g027920 {ECO:0000313\|EMBL:EES01076.1}
TAIR	AT5G40490	6.00E-83	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	4996654	5001908	-

Transcript Sequence
>GWHTAAEX011588 AGTTCTCTGCTGTTTTCGTGCGCCTCCGGCTTCGTAGCCCTAGTTCTTGTCGAAGAGCGGGATCTCATGGGTTCCAGGAAGGACGATAAGCACTCCGAGCACGATGGTGCCTGCCCTGGGAAAATATTCATCGGTGGGCTTGCCAAGGATACCACTATGACTACATTCTTGAAGCATTTTGGAAAGTACGGTGAGATTATCGATTCTGTGATAATGAAGGATCGATATACACAGCAGCCCAGAGGATTTGGCTTCATCACTTACTCGGACCCTTCTGTTGTTGATAAAGTAATCGAGGACAATCATGTTTTAAACGGGAAACAGGTTGAGATAAAGAGGACTATCCCAAAAGGTTCCTCCCAGTCTAAGGATTTCAAAACAAAGAAGATTTTTGTTGGAGGCATACCTTCAACTGTTACGTCTGATGAGTTCAAGAGTTTCTTCTCGAAGTACGGAAAGGTTGTTGAGCATGAAATAATTAATGATCATATAACGAAGCGCTCCCGAGGCTTTGGTTTCGTTGTCTATGATTCTGAGAACGTTGTTGATGAATTGTTGTCTAAAGGCAATATGATAGACCTAGCTGGTAGTCAGGTGGAGATCAAGAAGGCCGAACCAAAGAAAACCTCTAGTGCACCACCACCTCATTTTGGTAGTGATTATAGGGATCGCCCCTACGGCGGCGAAGGTGGTCTTGGTGGTGGATACGGTGGAGGATCCTTCGGTGGGTTTGGAGGGGGAGGAGGGGGTTTTGGCCCCTCCTCTTATAGGGGAGGAGGTGGCGCCGGAGGGTTGGGCCCTAGGATTGGTGGAGGAGGGTATGGCGCTGGGCCAGATGAGTTTGTAGGGGGAGGCAACGGATACGGAGGTTATGCCGGGGCCGGCGGCGGCCTGGGCGGGGGCTATAGGGGAGCGGAGCCATCCCTCGGCTACTCAAGCCGCTTCGGCTCCTACAGCGGGGGTGGTTTCGGAGGAGGTTACGGTGCCGCTGGCTTTGGAGGAGGGTACGGCCGAGATGAGGGCTTCGGAGGTTACGGTGGATCCGGCTACGGCGGTGGAGGCGCCGGCTATGATTCCGGTCCGGGTGCCGGTGGCTATGGCTCTGCCGCAGGCGGAGGAGGATTGTATGGAGGTGCTAGGGGAGGAGGAGGCTATGGTGCTGGTGCTGGGCCTGCTGGCCGGTACCACCCATATGCACGATAAGGCAGCACTACCATCTCCAGGTTTAGCTTTTACTCTCCTTAGTTCTTACTGAAGGATCGGGCGATTGATTGCTTGCTAGAGATGATACCAAGTTTATGTTCTGCTATAGCTACCTATCATCCAATCTGCTAGAGAAGACTTTTGAGAGCTTTGTCTTTCTTTTTTATTTTTCCTTTAGAAAAGATTTATGTACTAGCTTTAAGTTAGCAGCTTATGCAGTAGTGGCACTTATGTTATTCTCGTGCGTTTCTGTAGACTAAGATTATGCTTGTGCTTTCTTAATGTGTTTGCTTCCTTTAGGCTTTCTTTGGTTTCAATTTCTTAGAATATTTAATCTATTTTGCCTATCCAGAGTAAGCAGAACGATTAAGGTTAGTCCCTTTTTTTTTAAGATTATTATTATGATATGGATTAATCCTTTGAAATAGAAACTGGCAGTCACATTTTTTTAATTACCTCTACTATGATTTAAGAAGAATATTAGTCTTTTAGAGCATTATATAATTAGACTAGTATAAGTGTATCATTAAGACATTTAGATTTGCAGCATTTTTCTTATTACTATTATGATTTAAGACGAGTATGGTTAAGATGCATAGCAATATGAATAATTGGTATTATATTCTGCTGTTTTTAGGCGATTTGTTTTTAGATGTGTTTTTTGTTCATATTGCTGTGCTGGTTTTTCATGTAAATTTCGTCCGGGTGATTTGCTCGACTAATGTTTTATTTAAACTCTTATTCTACGTGGCTTAGTTTAAACTTGCGGAAGTTTACGTTCAATCTGTTTTTCTAGTTAAGAATATATTTATCCTTTTATTGGCAAGCTCTTTTTTCATTTTAATAGCTCTGATCTTCTATTGTGACATCTAAGATACTTCATACATTTGGTTTGATGAAGCAAATACGATGGTGCCATTCTTAAAATATATTTTGCTACTAATACCAATAGAAATAAATATTCTTTAAATAAATAACTAATTATTATAATCATCAGTTACTAATATTCTTATTAATCATAATATCTAATTTCGATCGGCGGTTATCTTTGATAGAAATACAGATTATTAAAAAAATTGCTGCTACTGTATTACTGTTTCGTAAGTTCTGTCGAAGTATTCAATTCTATCAGTTAATGAAAAAGGATTAATTCAACGCTACAAATGATGAATTTGATTCGCATTAGTTACAAAAAAATGATGAAGATTTTTAAAAAAAAAGTATAAAAAAAGTATTAACTTTCAGTGAATTAGTTAAAAATTGTTTAAATATTTTATAAATGAGTATTTAATAATCAAGTAACATACATATCATACATACAAACAAATGCCCTTGGCATTTCAAAGTTGATGGCCAACCATAAACTTAAATTCTATTAGCTATTGGGCTTCAAGCGGGCAATGATTGTACAAAATCGCCCCTCTGATGTTGTTAGGCTTCGAGCGAAAAAGATTGCATTCCCATAAACTCTTCCGTCAGAAAGTTATGCATCGCCCATTAGCTCTTGAAACTTCTGTATGCACAATAGCTGAAGAAAACGACTCTTAGCGCTCACGGAGTGCAATGGGGAAAGGATTCTTGCTCCTAGTATGGTTAGAAGAATCTGAGCATGACTCAGCAGCTTTTTCTATAGGAAGGCCTTTGCTAGCCTTCTGAAGGGGCGGGCAGCAGCAAGCCTAGCAGTAAGTAGTTTCGGTAAGGGTAGTGTCCCAGCATCCTGAATATTCTTTTTGGAGCTACGGGATCCTAGATAGAGGTGTTGAAAACTACATGCTGTGGTTATGGTGGTTTTGGGCTATCATATTCTCACATCACAGATGTGCTTCAAGCTTGTTAGGAGGAAGCATGCCATTCCAAAGTAGTGGATGATGTCACCATCGTGGCTGTTAGCTATGAAGATAGATGCATCAAGATTTTTTCTTTTTTTTTTCGTCTTCCTAAAATTGAAGAATAAATTTCCCTGGAATATAAGCATGAACTTGA

Network for GWHGAAEX011588

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	20	87	1.50E-12
PF00076.21	RRM_1	108	174	1.00E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	94.700
SRP064423	SRR2545915	Juvenile tuber	194.920
SRP108465	SRR5643513	five period of Gastrodia elata	228.690
	SRR5643514	five period of Gastrodia elata	184.320
	SRR5643515	five period of Gastrodia elata	190.980
	SRR5643524	five period of Gastrodia elata	210.880
	SRR5643525	five period of Gastrodia elata	104.620
	SRR5643528	five period of Gastrodia elata	90.440
	SRR5643658	five period of Gastrodia elata	66.270
	SRR5643659	five period of Gastrodia elata	351.180
	SRR5643660	five period of Gastrodia elata	325.490
	SRR5643661	five period of Gastrodia elata	356.120
	SRR5643662	five period of Gastrodia elata	404.330
	SRR5643663	five period of Gastrodia elata	341.740
	SRR5643664	five period of Gastrodia elata	423.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	164.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	117.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	174.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	158.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	153.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	140.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	164.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	147.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	173.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	162.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	153.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	153.140
SRP279888	Gastro	Gastrodia elata tuber	246.84
	Juven	Juvenile tuber	285.44
	Mother_Gastro	Mother tuber of Gastrodia elata	113.24
	Mother_Juven	Mother tuber of Juvenile	168.90