Gene detail

Detail information of GWHGAAEX011589/evm.TU.scaffold_38.173

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG3724	Negative regulator of COPII vesicle formation
nr	gi\|672119535\|ref\|XP_008783007.1\|	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103702377 [Phoenix dactylifera]
trEMBL	tr\|B9SLQ7\|B9SLQ7_RICCO	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF35413.1}
TAIR	AT3G27325	hydrolases, acting on ester bonds

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	5005983	5041576	+

Transcript Sequence
>GWHTAAEX011589 GCCCAAACGATCCGATTCCTGTTAGATTCGATGCACTAAGAGTCTGATCGAAATAGCGAGCGATTGAGGCTGCGACCCTCCGGTCACGGCATTCCATCGTCTAGAACTGCCGCACTGCCGCACTGCCGCACGAACTCTTCTCCGCCTTGAAGGTCTCCGGCTGGCTGCACCGGCGAAGGTCCCCTGCACTTCATTTGTGATAAAACCAATGGCCTTTCTGACGGAACCATGAATCATCATCGAGAATTCCCTTCAACTGAAATACAGCCCAAGGTTCTCCCGGTGAATCTGTTTACTTCAGGACATTTATACTCTATAAATTTTGTTCATGATCCCATCCCTCTTCCCCATCTTGCATATGCCACTGTTCTCCTCCTTCCATCTCATATTTGACAGTATCCGTGATTGGCTTCAATGAGCTTGGTTTTCTTTATTAAGTTTTCCGCCTCCGAATAGATTTAGCGTATTGACCTATTGCCCACTAATTGATGTTGTTGTATTAGTTTTTGATTGAAGCCAGAATCATGGAATTACAATAAGTTCAGAATTAGAGCGTTATTTTGATCTTGTTTTAACACAGCTTAAGCTTCCACTTAAGATTTGAACTGTGATTTGCGAACCTGAGCATAGGTTTGTGTGAAAATGTCCGGCTTTTGGTTGAACTTTAAGATTGGGGTTCTAGCGATCCTCTCCCTCCTTGTTGGATTAACCGGATTCTATGAACTATTGAAGCCGGTTCCTAATGGATGCGTCATGACTTATATGTACCCGACATATATACCAATCTCGACACCGGCCGATGCTTCTTCGCAAAAGTATGGGATCTTTCTGTACCATGAAGGGTGGAAGAAAATTGATTTTGCGGAGCATGTTAAGAATCTCGATGGAACCCCTGTTCTGTTCATTCCTGGAAATGGTGGAAGCTATAAGCAGGTTCGTTCATTGGCTGCAGAATCTTCTAGAGCGTATCAAGGAGGACCACTTGAGGCAACCTTTTATCAAGAAGCTTCATTTCAAAATGTTGGCGTTTCAAGTGATTATCCTACTAGATATAAGCATAAGTTGAACTGGTTTGCTGTTGATCTTGAGGGGGAGCATTCTGCAATGGATGGACGGATACTCCTAGAGCATACTGAATATGTTGTATATTCTATCCATAGGCTATTGGATTTGTATCAAGATTCCCGCAAAGCAAGAGTAAAAGAGGGAGCTGATGTTTCTGGAAGCTTACCCAGTAGTGTCATACTAGTTGGCCATTCTATGGGTGGTTTTGTGGCTAGAGCTGCAGTAATCCATCCAGGTTTGAGAAAATCAACCGTTGAGACTATCATCACACTCTCCAGCCCTCATCAGGCCCCTCCTATTGCATTGCAGCCATCATTGGGTCATTATTTCTCTCAAGTGAATCATGAATGGAAAAAGGGGTTCATGATGCATTCCATTCATTCTGGTCAAACCTTCTTCCCTGGTTCAAAACTCTCCCATGTTCTTGTTGTATCTATATCAGGAGGATTTTATGATTATCAGGTTCGGTCAAAGTTGACTTCTTTGGATGGCATTGTTCCATCCACAAATGGTTTTACGATTAGTAGTTCAAGCATGAAGAACGTATGGTGTTCAATGGAGCATCAAACTATTGTGTGGTGCAATCAAGTAGTCGTCCAGCTTTCACATGCGCTTCTTTCTCTAATAAACTCTGAAAATGGACAACCGTTTTCTGGTTTGGAGAAAAGACTTTTTGTTTTAACTAGAATGCTACAAAGTAGTTTACCTCGGACTTTTGGATTGATAAAGTCTGGGCTATCATCTGCTTCCCAAAACCTTCCCATTGGTGGTGTGAAGGATACTGATGGATTGCAAATGAGAGAATTTTCATCCTGCCCTTCATCCTTTCAGTGGAAGGATGATGTTCATGAGAAAGATTTATACATTCACTCAACTTCTGTCACTGTGTTGGCCATGGATGGGAGAAGGCGGTGGTTGGACATAAAAAATCTGAGTTCAAATGGCAAAGAACACTTTATTTTTGTTACAAATCTTGCTCCATGTTCTGGGGTTAGGCTTCATCTTTGGCCAGAGAAGCTCAAGTCTTCAACAGGAGATAATCTGCAACATGAAAAAAGAATCTTGGAGGTGACCTCAAAGATGGCCTATATACCTACTGGACCTGCTCCAAGGCAGATTGAACCAGGAAGCCAGACTGAGCAAGCACCTCCATCTTCTGTTCTGTTATTACGACCTGAAGAATTGCGTGAATTTCAGTTCATAACTATTTCTGTTGCTCCACGGCCGACTGTTTCAGGCCGTCCTCCCCCTGCTGTATCTATGGCAGTTGGCCAATTCTTCAATCCAAAGGATGGAGAGAGGAACTTTTCTCCCAGTGTGTTGCTCCGTACTATCTATTCTAAGGAGGAAATTTTCTTAAAGGAGGATCATCCTCTTGCTTTGAACTTTTCATTCTCTGTAAGCTTAGGTCTTTTACCTGTGAGTTTATCGTTGCAAACTGAAGGCTGTGGATTGAAAGATTCTACTGATCATGTGGATCAAAGCAGTCTGTGCAGGGCACGATGTTTTCCACCCATAGGTTTGGCATGGGATTCTGTTTCTGGCCTACATGTTATTCCAAACATCTACTCTGAGACGATCATTGTGGATTCCTCGCCAGTAATGTGGGATTCTGGACATGGTTCTGACAGAACTCTCTTATTTTTGCTGGCGGATCCTCATTGTTCTTATAAAATCAATGTTAGTGTTTCTCTGACTGCTGCTGCTAACAGATTCTATCTTCTTTATTCATCTCAGGTTATTGGCTTCATGGTAGTTGTGGCTCTTTTTGCTCTAATGCGACAAGCACATACTTGGGAGCTGAATTTGTCTCTTCCTTCCGTTTTAACAGTCGTGGAGCTAAATTTGAGAATACCACGTTCCTTTTTATTATTTGCAGTGCTGCCTATATTTGCTTCGTTGTTTATGTCATGGTATACAAGCCATGACCCTCCAGTTGTGAGCTACATCACCATGTCTATTATTTGCTATTTAATTGCAAATGGATTTCTGATCATTCTGATCCTGAGTTCTCTGTTAATTTTCTATGTGAGCGCTGTTCTACATATATTCATCAAAAGACGATGGCTAGCTTGGCAAGAAAGCATGTGCGCCACTTTTTTTAGTAAGGTTATTGGCTTTTTATCTTTCTTTTTGACATTGAAGGTTATGCAAATTCTGAGTTCAAATTCAACGCTTGTTGTAGGATTTTTCTCAATTTCTTTGGCCTGCTTTGTTCATCCAGCACTTGGTCTGATTGTGCTTCTCTTCTATCATTACTTCCATTGTCATGTTGCTCTTTGCAGTTTTTTGGCGACTTCATTTCGCAGTAATGCTCAAAGGGAGTTCGTCGACACGAAATCCTTGGGCTCATCTTTACTATCCCAGTCAAAATCTAATGATGCACCTGGCTCACTTCTTCCTATTGATGATAGCTGCTCCAGTAGCCCAAACTCTGCAAAAGGCTATGGGGAAAGTCAGCTAGAGATATTCAATTACAGGCATGGCATACTGACGCTGCATCTTCTTGCAACTCTTATGTTCATTCCTTCTCTGGTTGCTTGGCTCCAGAGAGTTGGGATGGGCTCAAACTCTTCGTGGTTCATTGACTCATTTCTCTGCATTGGGGTCATTCTTCATGGTCTGTCTGGATCAAGGCCTGAAATTTACTTTCTCTCAATCCCCTTCTCGCCTTTCAATAAAAGTGAGATCAGGTTGAGCCTAGTGTACCTCCTCTCTGGATACTATTCCTTTCTATGCGCCCTTGCTGCTTCTCCTTACAAGATATTCTACGCCGCTGCTGCCATTGGTATCATCTTCCTCTCCTTCAAGATCATTTACAGATACCGAGTGTGCGCTGGCAGTCATCTCAGAAATAATAGTAAACACTCTCACAGACTCTAGCTGCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATTTATACATTTGAGAATTAAGGAAATTTAAATGTTAGCTCTTTGGGAAGAAAGAGAGGACTTTGTCAACCTGTTGAATTTGCATGTTTATTTTATTTGAAGAGATTTTTTCTCCTTACATGTATTATTTTTGGTTAACCGCCCTTAGTTTAGTTTGTAAACTTTCATACATAGCATCCAACATCTGTGTATTTATATTAATGATTTGATAGTGTCATGCATGAAAGGCATTGGATCGTATTCTTATTTTGACAGGTTGTTATTCTGTAAATTTATGTTGTTAAAAACAATGCTTTTTATTTTACTAATTTTTGG

Network for GWHGAAEX011589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07819.12	PGAP1	80	348	5.40E-81

Protein Sequence

>GWHPAAEX011589
MSGFWLNFKIGVLAILSLLVGLTGFYELLKPVPNGCVMTYMYPTYIPISTPADASSQKYGIFLYHEGWKKIDFAEHVKNLDGTPVLFIPGNGGSYKQVRSLAAESSRAYQGGPLEATFYQEASFQNVGVSSDYPTRYKHKLNWFAVDLEGEHSAMDGRILLEHTEYVVYSIHRLLDLYQDSRKARVKEGADVSGSLPSSVILVGHSMGGFVARAAVIHPGLRKSTVETIITLSSPHQAPPIALQPSLGHYFSQVNHEWKKGFMMHSIHSGQTFFPGSKLSHVLVVSISGGFYDYQVRSKLTSLDGIVPSTNGFTISSSSMKNVWCSMEHQTIVWCNQVVVQLSHALLSLINSENGQPFSGLEKRLFVLTRMLQSSLPRTFGLIKSGLSSASQNLPIGGVKDTDGLQMREFSSCPSSFQWKDDVHEKDLYIHSTSVTVLAMDGRRRWLDIKNLSSNGKEHFIFVTNLAPCSGVRLHLWPEKLKSSTGDNLQHEKRILEVTSKMAYIPTGPAPRQIEPGSQTEQAPPSSVLLLRPEELREFQFITISVAPRPTVSGRPPPAVSMAVGQFFNPKDGERNFSPSVLLRTIYSKEEIFLKEDHPLALNFSFSVSLGLLPVSLSLQTEGCGLKDSTDHVDQSSLCRARCFPPIGLAWDSVSGLHVIPNIYSETIIVDSSPVMWDSGHGSDRTLLFLLADPHCSYKINVSVSLTAAANRFYLLYSSQVIGFMVVVALFALMRQAHTWELNLSLPSVLTVVELNLRIPRSFLLFAVLPIFASLFMSWYTSHDPPVVSYITMSIICYLIANGFLIILILSSLLIFYVSAVLHIFIKRRWLAWQESMCATFFSKVIGFLSFFLTLKVMQILSSNSTLVVGFFSISLACFVHPALGLIVLLFYHYFHCHVALCSFLATSFRSNAQREFVDTKSLGSSLLSQSKSNDAPGSLLPIDDSCSSSPNSAKGYGESQLEIFNYRHGILTLHLLATLMFIPSLVAWLQRVGMGSNSSWFIDSFLCIGVILHGLSGSRPEIYFLSIPFSPFNKSEIRLSLVYLLSGYYSFLCALAASPYKIFYAAAAIGIIFLSFKIIYRYRVCAGSHLRNNSKHSHRL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05294	PGAP1	Metabolic pathways	map01100
K05294	PGAP1	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	map00563

Gene Ontology

GO term	Ontology	Name
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.200
SRP064423	SRR2545915	Juvenile tuber	18.730
SRP108465	SRR5643513	five period of Gastrodia elata	13.660
	SRR5643514	five period of Gastrodia elata	14.710
	SRR5643515	five period of Gastrodia elata	13.610
	SRR5643524	five period of Gastrodia elata	15.190
	SRR5643525	five period of Gastrodia elata	16.060
	SRR5643528	five period of Gastrodia elata	13.310
	SRR5643658	five period of Gastrodia elata	17.720
	SRR5643659	five period of Gastrodia elata	12.620
	SRR5643660	five period of Gastrodia elata	12.200
	SRR5643661	five period of Gastrodia elata	9.930
	SRR5643662	five period of Gastrodia elata	11.640
	SRR5643663	five period of Gastrodia elata	12.630
	SRR5643664	five period of Gastrodia elata	12.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.610
SRP279888	Gastro	Gastrodia elata tuber	26.17
	Juven	Juvenile tuber	21.79
	Mother_Gastro	Mother tuber of Gastrodia elata	26.22
	Mother_Juven	Mother tuber of Juvenile	20.52