Gene detail

Detail information of GWHGAAEX011593/evm.TU.scaffold_38.177

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1916	Nuclear protein, contains WD40 repeats
nr	gi\|743807210\|ref\|XP_010928032.1\|	PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9LTT8\|VCS_ARATH	Enhancer of mRNA-decapping protein 4
trEMBL	tr\|F6GZB1\|F6GZB1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45297.1}
TAIR	AT3G13290	varicose-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	5117855	5159323	+

Transcript Sequence
>GWHTAAEX011593 TAAAATTCCACCAAATACTCTGCCTTCCCCATCAGTCCCATCTGTTTCCTTTCAGATCTATCCATGGCTTCCTCCAGCAGCAGCCCAGGCCATAGCCCCAGTGCCAATCCAAGTCCTGCCTTTTCCTTCGACGTTCAGAAGCTCTTCAAACCTCCATCTCCTTCATTGATCTCTGCAGCTAACCCAAGAGGCGCAAACCCCTTCTTACAACCTCCATCCTCGTACCCGGCCCCGCTACTACCTTCCACATCGCCAGCGCCGCATCTCGGTCCCTATTCCTACCCTCCATCCTCGACGCCGTTCCAGCATCGGCCGCCCTTTCTTCACTACCCACAGGCTCCATCTCCAATTCCGAACCCTAACATCAGCCCCAGTCCTAACGCAGGCGCACGACTAATGGCGCTTTTGGGCACTTCCCAAACTGCCAATCTGGAGTCATCTATTTCAATGCCTTCGTCGACAGCACCTTTAGAGTTTTCAGCGGCACCCGGTAATCCTCCAATTCTACATCCCCCGCTTCCAGCCACGCTGCAACAGGCAGATCCGGCTAGGCTACCGAGCAGCAAATTGCCGCGGGGACGGCGCCTGGCTGCTGGAGATCTGGCCGTGTATGATGTAGATTCCAGGTTGCCGGGGGAGTCTCAGCCGCCACAGCTCGAGGTTACTCCTATCACGAAGTATATATCGGATCCAGGCCTTGTGCTTGGGCGTCAGATTGCACTCAACCGTGAGTACATCTGCTACGGGCTCAAGCTTGGAGCTATTCGAGTGCTTAATATTAACACAGCACTTAGATCATTGCTTCGGGGGCATACTCAGAAAGTTACAGACATGGCTTTCTTTGCTGAAGATGTTTCATTACTGGCCAGTGCAAGTATAGACGGTAGAATTTTTGTGTGGAAGATTAATGAGGAGCTTGATGAGGATAATAAGCCTTTGATAACAGGAAAAATTGTATTAGCTATACAGATTGTAGGTGCTGGAGAAGGAGAGACTTTTCATCCACGAGTTTGTTGGCATCCTCATAAGCAAGAAGTTTTAGTTGTTGGAATTGGGAACTATCTGCTAAAAATTGATACAATAAAGGTTGGGAGAATTGGGCAGTTTTCAGCAGAAGAACCTGTTAGATGCCCCATTGATAAGTTAATTGATGGAGTTCAACACATTGGTAAACATGATAGTGAAATTACAGATATTTCCATGTCTCAATGGATGACAACTCGTTTGGCTTCAGCATCAAAAGATGGAAAGGTAAAGATTTGGGAAGATCGCAAGGTGATGCCCACAGCCATTCTAATCCCACATGACAGCCAACCTGTTAGCTCAGTTGCCTTTATGACATCACCTGAGCGTCCTGATCACATAATTCTTGTGACTGCGGGTCCGTTGAACAGAGAACTGAAGATATGGGCCTCTGCTAATGATGAAGGTTGGCTTTTACCGATTGATCATGAGTCATGGAAATGCAATCAGACCTTAGATTTGAGAAGTTCCTCAGAGCCCATTCTTGAGGAGGCATTTTTCAATCAATTTGTAGTGTTGTCTCGAGCAAATCTTATATTACTGGCAAATGCAAAAAAGAATGCCATCTATGCAGTACATGTGGATTATGGTCTGAACCCTGCCTCAACACATATGGATTGCATAGCAGATTTTACTGTTACCATGCCAATACTGAGCTTTACAGGAACAAGTGAATTAATTTCTGATGCCGAGCAGATTGTTCAAGTTTATAGTGTGCAGACTCAGGCTATTCAACAGTATGCATTGGATTTATCTCAGTGCTTGCCTGTGCCTGTTGAAAATGAGGATGGGCACATTTCAGAAGGATTTTTTGTACCACATAATGCTTCTGGAGATACAAGTAATGGTGTACCTATTGCAAATTCTTCATCTAATCCTGCACTTTTAAACCGCTCCGAAGATAACAAGCACTCTGTTTCGAGTACCTCAGAGGCTACTGTTATTCGTGAACTTACTAATTCAAATGTTGAAAGTTCTACGTCTGCTTATCAACTTTCAAGTGTTGATAAAAGTAATAGCGAAGTTGCATCTTCTCTTCCATTGACTTTAGGTTCATCTGAAAAGCTTAATTTTTCGAGAACTGGGTCTGGTGCTTGTGAGCAAGAAAATTCACTGAGTGCTGGTAGTTTTGAGATCCAAAATCATGATCCTACAGTGGACAGGACATTAAATGTTGTAATAACAAATGTTCCTGATGATACTCCTCTGGCGGTTAAGGAAAAAAACAAGGCTGTGATAGATGCTTTTGGTAAACCAACACATTTGGTAACTCCGTCTGAGATATTGTCTGGTGTTATTCCTGCTGAAAACAGTTATCCTAATCACGGGCTTAGGAATGACGACTTCGATGCTCAAAAGGCATTCAATAAACATGGTCTGGGCCAAGTAGATGGTCGAGTTGTTGGTGATATGCTTATAATTAATTCTGACCATATGAATCCTGAAAACGAGTTTCAAGAAGCCCATGCTGAGGAGAAATTAGTCGAGCCTGGTTTTTCTGGAGGAATCAATATTGTTGAGAGAAAGGCCTTTAAAACAGAAGAATGCTTTGTGGAGGGAACTCATATTCTGGCTACTAGTGTTTCTGGAAGATTTGATCCACCAACAGGTGCCTGCAAAGAAATAAGTGAAGGGACCTTAAAAGAGGATGTGTTATTTAATGATTCATCGTCCGTTGGCACAAACTCACAACCAACTTCAGATTTAAACCCAAATAAACCTAAGAAAACTTTTTGTCAAGCGCCGGTTTCATCTGCACCTGTATCTGCCCCAGATGCCTCAGATTCTTTAGTTGAGCCTGGGTCTAGCATTGTCAATCATTCTACGAATGTTCTAGTCCAGCTTCAGCTAATGCAGGACTTGTTAAACCAGTTAGCATCAAATCAAAAGGAGATGGAGAACCAGATTGCTGAGATTGTATGTGTTCCAGTAGTGAAGGAAGGCAAGAGATTGGAGACTGCTCTTGGCCGAAGCATGGAGAAATCTATTAAGGCCAACGTGGATTCTTTATGGTCCCGTTTTCAGGAAAAGAATGCCAAACAGGAAAAGGCTGAAAGGGAGAACATGCAGCAAATAACTAGCCTAATTAGCAACTGCATTAATAAGGACATCCCTGCTGCAGTAGAAAGGACATTTAAGAAGGAGATATCTGCAGTGGGGCAGGCTGTGGCCCGTGCTATCACTCCTAGCATTGAAAAGTGTATTACCTCGGTTATAGCGGACTCATTTCAGAGAGGGGTTACAGATAAAACAGTTGGTCAGCTTGAGAAAACAATTGGCTCAAAGTTGGAAGCATCATTGGCTAGACAAATCCAATCACAGTTCCAAACAACTGGCAAGCATGCTCTGCAGGATACATTAAAGTCTACTTTGGAAACATCAGTTGTTCCTGCATTTGAAAAATCCTGCAGAGGGCTGTTTGAGCAGATCGATGAAACCTTCCAGAAAGGTTTTACGGATCACACTTCTTTGGCGCAGCAGCAGTATGAGTCTTCACATACTCAGCTTGCAGTAACTCTTAGGGATACGATTAACTCTGCATCAACAATCACTCAGAATCTTGTCACAGAGTTAAATGACAGCCAGAGAAAGCTCTTATCGTTTTTTTCTGCTGGAAACCCTAAACCTAGTCCCATGGCAATGCAAAAGAGCAATGGAACTTTGGGTGGGCATCCTGATATGGCGCTATCTGTTCAGGAGCTTGAGGCCCCCGTTGATCCTACAAAAGTGCTCTCAAGACTGATATCTGAGCACAAATTTGATGAGGCATTCACATTAGCTCTCCAGAAAAGTGATCTTTCTATCGTCTCCTGGCTTTGTTCACAGGTGGATCTGCACGGGCTGTGCTCTATGGCGCTGCCGCCTCTGAATCAGGGCGTCCTACTCTCCCTTCTTCAGCAGCTGTCGTGCGACACTGGCACCGAAATTCCGCGGAAACTTGGGTGGATGACCGATGTCTCCGTTGCCATAAACCCGGCGGATCCGATGATTGCGCCGCACGTCCGCCCTATTTTCGAGCAAGTTTACGGCAGACTCATGCACCAAAAAATGCTCCACACGACCACATCCGCCGAAGCTTCCAGCTACCGGCTAATCATTCATGTTATAAATTCGGTGCTAACGAGCTGCAAGTGATGATTTATTTTATTGGGCCTTTTTCTCTGGGGAGGAGTCAGAAAGAGGCACATTCTTCTTCGTCTACTTATTATTCAAGTCTATAGGGATAGTGGTAGTGTTGTAAAATAGGCTAAAAGAATGGCATTTTTAATTTTTGGTTTCTATTACAATGTAGTTCTTTTGATTCGACGGGAGTAGATTTTTCATTGTAATTTTCATGAAGTAACGGTTTTAATATAAATGCATTACATGCGCTTGTACAGCATATTGACAGTATGGCTGTTCATAGAAGAAGCCTTTCATTCTTCCTTTTTAGTTTTTTTTTTTTTTTT

Network for GWHGAAEX011593

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16529.4	Ge1_WD40	200	514	1.70E-18

Protein Sequence

>GWHPAAEX011593
MASSSSSPGHSPSANPSPAFSFDVQKLFKPPSPSLISAANPRGANPFLQPPSSYPAPLLPSTSPAPHLGPYSYPPSSTPFQHRPPFLHYPQAPSPIPNPNISPSPNAGARLMALLGTSQTANLESSISMPSSTAPLEFSAAPGNPPILHPPLPATLQQADPARLPSSKLPRGRRLAAGDLAVYDVDSRLPGESQPPQLEVTPITKYISDPGLVLGRQIALNREYICYGLKLGAIRVLNINTALRSLLRGHTQKVTDMAFFAEDVSLLASASIDGRIFVWKINEELDEDNKPLITGKIVLAIQIVGAGEGETFHPRVCWHPHKQEVLVVGIGNYLLKIDTIKVGRIGQFSAEEPVRCPIDKLIDGVQHIGKHDSEITDISMSQWMTTRLASASKDGKVKIWEDRKVMPTAILIPHDSQPVSSVAFMTSPERPDHIILVTAGPLNRELKIWASANDEGWLLPIDHESWKCNQTLDLRSSSEPILEEAFFNQFVVLSRANLILLANAKKNAIYAVHVDYGLNPASTHMDCIADFTVTMPILSFTGTSELISDAEQIVQVYSVQTQAIQQYALDLSQCLPVPVENEDGHISEGFFVPHNASGDTSNGVPIANSSSNPALLNRSEDNKHSVSSTSEATVIRELTNSNVESSTSAYQLSSVDKSNSEVASSLPLTLGSSEKLNFSRTGSGACEQENSLSAGSFEIQNHDPTVDRTLNVVITNVPDDTPLAVKEKNKAVIDAFGKPTHLVTPSEILSGVIPAENSYPNHGLRNDDFDAQKAFNKHGLGQVDGRVVGDMLIINSDHMNPENEFQEAHAEEKLVEPGFSGGINIVERKAFKTEECFVEGTHILATSVSGRFDPPTGACKEISEGTLKEDVLFNDSSSVGTNSQPTSDLNPNKPKKTFCQAPVSSAPVSAPDASDSLVEPGSSIVNHSTNVLVQLQLMQDLLNQLASNQKEMENQIAEIVCVPVVKEGKRLETALGRSMEKSIKANVDSLWSRFQEKNAKQEKAERENMQQITSLISNCINKDIPAAVERTFKKEISAVGQAVARAITPSIEKCITSVIADSFQRGVTDKTVGQLEKTIGSKLEASLARQIQSQFQTTGKHALQDTLKSTLETSVVPAFEKSCRGLFEQIDETFQKGFTDHTSLAQQQYESSHTQLAVTLRDTINSASTITQNLVTELNDSQRKLLSFFSAGNPKPSPMAMQKSNGTLGGHPDMALSVQELEAPVDPTKVLSRLISEHKFDEAFTLALQKSDLSIVSWLCSQVDLHGLCSMALPPLNQGVLLSLLQQLSCDTGTEIPRKLGWMTDVSVAINPADPMIAPHVRPIFEQVYGRLMHQKMLHTTTSAEASSYRLIIHVINSVLTSCK

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K12616	EDC4	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.240
SRP064423	SRR2545915	Juvenile tuber	37.010
SRP108465	SRR5643513	five period of Gastrodia elata	32.640
	SRR5643514	five period of Gastrodia elata	28.700
	SRR5643515	five period of Gastrodia elata	35.990
	SRR5643524	five period of Gastrodia elata	34.100
	SRR5643525	five period of Gastrodia elata	25.850
	SRR5643528	five period of Gastrodia elata	24.740
	SRR5643658	five period of Gastrodia elata	29.830
	SRR5643659	five period of Gastrodia elata	37.470
	SRR5643660	five period of Gastrodia elata	36.930
	SRR5643661	five period of Gastrodia elata	37.550
	SRR5643662	five period of Gastrodia elata	35.810
	SRR5643663	five period of Gastrodia elata	35.880
	SRR5643664	five period of Gastrodia elata	38.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	51.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.460
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.460
SRP279888	Gastro	Gastrodia elata tuber	38.80
	Juven	Juvenile tuber	57.57
	Mother_Gastro	Mother tuber of Gastrodia elata	47.33
	Mother_Juven	Mother tuber of Juvenile	57.01