Detail information of GWHGAAEX011594/evm.TU.scaffold_38.178


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG15881.00E-135RNA-binding protein Sam68 and related KH domain proteins
nrgi|225462037|ref|XP_002274648.1|1.27E-164PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
Swissprottr|Q9FKT4|QKIL2_ARATH3.00E-136KH domain-containing protein At5g56140
trEMBLtr|D7UAP0|D7UAP0_VITVI5.00E-165Putative uncharacterized protein {ECO:0000313|EMBL:CBI39805.3}
TAIRAT5G561401.00E-135RNA-binding KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004151611985178422-
Transcript Sequence

Network for GWHGAAEX011594

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16544.4STAR_dimer36681.70E-07
PF00013.28KH_11361790.00018
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms62.070
SRR2545915Juvenile tuber42.030
SRP108465SRR5643513five period of Gastrodia elata90.740
SRR5643514five period of Gastrodia elata69.870
SRR5643515five period of Gastrodia elata64.820
SRR5643524five period of Gastrodia elata61.370
SRR5643525five period of Gastrodia elata98.340
SRR5643528five period of Gastrodia elata66.940
SRR5643658five period of Gastrodia elata85.310
SRR5643659five period of Gastrodia elata101.890
SRR5643660five period of Gastrodia elata122.040
SRR5643661five period of Gastrodia elata124.080
SRR5643662five period of Gastrodia elata129.500
SRR5643663five period of Gastrodia elata93.590
SRR5643664five period of Gastrodia elata133.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_196.930
SRR6049655Rhizomagastrodiae_C368-T10_good_186.750
SRR6049656Rhizomagastrodiae_C368-T07_good_192.340
SRR6049657Rhizomagastrodiae_C368-T07_good_1122.380
SRR6049658Rhizomagastrodiae_C368-T04_good_1103.250
SRR6049659Rhizomagastrodiae_C368-T04_good_1119.750
SRR6049660Rhizomagastrodiae_C368-T01_good_1106.350
SRR6049661Rhizomagastrodiae_C368-T04_good_1100.930
SRR6049662Rhizomagastrodiae_C368-T01_good_182.070
SRR6049663Rhizomagastrodiae_C368-T01_good_181.890
SRR6049664Rhizomagastrodiae_C368-T10_good_187.600
SRR6049665Rhizomagastrodiae_C368-T10_good_187.600
SRP279888GastroGastrodia elata tuber 99.56
JuvenJuvenile tuber119.64
Mother_GastroMother tuber of Gastrodia elata 60.30
Mother_JuvenMother tuber of Juvenile 74.74