Detail information of GWHGAAEX011595/evm.TU.scaffold_38.179
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681873|ref|YP_001865069.1| | 9.00E-31 | hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102] |
| KOG | KOG1407 | 0 | WD40 repeat protein |
| nr | gi|743810838|ref|XP_010929005.1| | 0 | PREDICTED: THO complex subunit 3 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9FKT5|THOC3_ARATH | 0 | THO complex subunit 3 |
| trEMBL | tr|M0TF54|M0TF54_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P06140_001} |
| TAIR | AT5G56130 | 0 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 5208704 | 5246127 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011595
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 13 | 48 | 1.50E-06 |
| PF00400.31 | WD40 | 61 | 95 | 0.00027 |
| PF00400.31 | WD40 | 182 | 219 | 5.00E-05 |
| PF12894.6 | ANAPC4_WD40 | 232 | 283 | 5.70E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12880 | THOC3 | Spliceosome | map03040 |
| RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.940 |
| SRR2545915 | Juvenile tuber | 43.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.840 |
| SRR5643514 | five period of Gastrodia elata | 41.720 | |
| SRR5643515 | five period of Gastrodia elata | 42.250 | |
| SRR5643524 | five period of Gastrodia elata | 43.400 | |
| SRR5643525 | five period of Gastrodia elata | 36.590 | |
| SRR5643528 | five period of Gastrodia elata | 40.710 | |
| SRR5643658 | five period of Gastrodia elata | 34.600 | |
| SRR5643659 | five period of Gastrodia elata | 34.240 | |
| SRR5643660 | five period of Gastrodia elata | 36.930 | |
| SRR5643661 | five period of Gastrodia elata | 38.360 | |
| SRR5643662 | five period of Gastrodia elata | 37.840 | |
| SRR5643663 | five period of Gastrodia elata | 34.180 | |
| SRR5643664 | five period of Gastrodia elata | 31.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.85 |
| Juven | Juvenile tuber | 51.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.98 | |
| Mother_Juven | Mother tuber of Juvenile | 47.66 |