Gene detail

Detail information of GWHGAAEX011596/evm.TU.scaffold_38.180

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0118	3.00E-69	FOG: RRM domain
nr	gi\|743858965\|ref\|XP_010942508.1\|	0	PREDICTED: flowering time control protein FPA-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8LPQ9\|FPA_ARATH	2.00E-36	Flowering time control protein FPA
trEMBL	tr\|F2D7K7\|F2D7K7_HORVD	0	Predicted protein {ECO:0000313\|EMBL:BAJ91078.1}
TAIR	AT4G12640	3.00E-69	RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	5258353	5287375	-

Transcript Sequence
>GWHTAAEX011596 CCAAACCTAGTACAACCGGCTCGACTTTCGCCCTAGGGTTTTTTTTCTCCAGCACACGTTCGCTTCCCTCACATCATTTTGGCCTCCTATAAATCTCGGACCCTACATTTTGCTCCCAGAGGGCGTTAGATCGCGGCAAGCGACATTTGAAGTTTGATCTTATTCGCCTTTCTTATCTTTCAAAGAATCACCGCTAAAGATGGGCAGGGGAGTTGGAAGCAAGGACAGGGCATATACTGATTTCTCACCCAGATTTGTAGACAGAGAACGACGAAGTGGCTGGGGCGTAGCTCCTCCTTCACGGAAACTCTGGGTTGGGAACTTGAGTTCTCATATTACTGAAAGCATTCTCTCGGAACAGTTCTTAAGGTTTGGCGACATTGAAAGCATAGCGTATTTACCCGGCAAGAGCTATGCTTATGTCAAGTTTAAAAAGGAGGAGGATGCTGTGCTTGCATTGAGAACACTTCATGGGTCTAATGTTGCAGGGATGCCTCTTAGAATCGAGTTTGCTAAGGGGGATGAGGCATATTATCTTCAAAAGGAGGCCAGAAAAGCAATGGAGAGGGGGGAATCAAGGGGAGAACCACTTTCAAGAAGAGAATTGAGAAATCAGAAATTTAGTCCTGAAAAATCTTCCGACAAGTCCAACAAGAGCTATAAGAGTGCTGAACCCAGTGAGGTTTTGTGGATAGGGTTTCCATCAGCTCTGAACGTCGATGAGATAATATTGAGAAGGGCTTTTTCACCTTTTGGCGAGATTGAGAAAATTACTTCATTTCCTGGCCGTAGCTATGCGTTTGTTCGCTATAGGAGTGTGGTTGCAGCTTGCAGAGCTAAAGAAGCTTTACACGGGAAACTCTTTAACAATCCCCGAGTGAACATTTGTTTTGCGAGGAGTGATGCCCCAGCCGAACACGGAAAGGCTCCTTCAAATGGTCCTTTCCCTCCACATTTGAAGCCTAACTTCTTGCCCGGGCCGAGCGGGAAGGCCCTGGAGCCCCTGCATGATGAAGAAGATTTTGAAAGTCCAGTACGAAATTTTCGAAGGGAGTCTCCACCTATTGTTTCAAAACTTGATAGGGCGCCTGGTGATCCCCATCCTCTGGAATTCATCAAGAACAAGCCATCGTTAAGGTTCGGCGTGGATCGAGAACCGGTTTATATCGGCAATTACGAGAACATGAGATTGCGAGAATTTGCTTCCGATCGAAGGGCCTCTGAAGAATTTTTCGAAAGACAGAGGACCGATCAGACAGAAAAGATTCCGCCGTGGCACAGTCTTTCTTTTGAAAGACCTCAAAGAGTTCCCCCCTTTGTAGATTCTTGGGATGTGGAGGACAGATCATTTCCTCTAACGAAGAAGCTTAAATTCGACTTGATACCTGACAAAGATCTTCCCGAGTATCCTTTCTCAGATTTAGAATCAGAAAAGTACGATAGCCTGCAAAAATCGTTTCCTGATTTGCCAGAGCATCATCATCATCATGGTTATAATAAGCCTTTGGATCCCTACATCATAAAAGGTGCTCACGATTTTTCGAGGGGTTTAAATCGTCCTCATGCCGAAATGGATGATTCTTGGGGCCACGTCGGCCACTCAGGTGCGGGTTCTAGACTGTTGCCTAATAGTTCACCCAAACTGCTCAGATCTACTCCTGAATCCCATAAACCTCCTCCACGTGACGAAATATGGAAGTGGGAGGGGACGATAGCCAAGGGTGGAACGCCGGTTTGTCGTGCTCTGTGTTTTCCGGTTGGCAAAGTTCTCGATTTTATGCTGCCTGAGTTTCTGAACTGTACTGCAAGGACCGGCCTGGATATGCTTGCGAAGCATTACTATCAAGCAGTGAGCACTTGGGTGGTGTTTTTTGTTGCTGAAAGTGATTCAGACATTTGCTTTTATAATGAATTCATGCATTATCTTGGAGAGAAGCAGCGCGCGGCCGTTGCTAAGCTGGGGGAAAAGGTTACTTTATTCCTGGTGCCGCCGTCCGACTTCTCTGAACAGGTGCTGAAGGTGCCAGGCAAAGTGAGCATTTCTGGTGTCATCCTGAAGTTCCAGCAAAACACTTCCAATTTCAGTTCTCTTCATCACCCTATGGATTTGGCAGAGCAGCCCAAAGCCCCCTCCCTTGCTCAAAGGCCAAATGAAGGGCACAAGTTTCTCGAAAGCACTTCTTTCCCAAAACCGAGTTCCCCCAATTTCCGTACATATTTGCAGAAACCGAGCACGTTTCAGCCATCATCTAACCGGGACGATGGCTTTCCCTCCTTAGCTCCCGCCCGTGGAGATAAATTACACAATTCTGATATGGATGGAACACACGATCAATTCCAACCCCGTAATACACCCTTTCTTGGCTCCGGTTCCGGCGCTTTCATCTCTGCTCCTTCCCAAGTATTTGGCCAATCCTTTTCGAAAGAATCAGTTAACTCAGGCAGCCATCTGACCGACGCTTTGGCTACGATTCCGGCGATCAAGTTTCCTCCTCAGGCTTCTCCGGCAGCGTCGATGTCTCTCCAGCCCGAGAGGCTTGCTCATCTTGCCGCGCTTCTCGGGAGCCAGAAGCAGTCTGGGGAGGAGCTTTCTCTGTCTCTTGACGAAAGGGCGAAGTCCTTGAATTCTCTTGCTCCCCCTTCCTATTTACCCTTGCCATCTGCAGGGTCGCAGCAGCCTGACACCCCTTCGGCTCAGATTATTGGGCAGCAGGCTAATAGTCTGCAGGAGCCAAACAGCTCCAGGGAAGAAACAGATGCAGATCCCGAGAAGCGCTTGCAGGCAACGCTGCAGCTGGCCGCAGCTCTCCTTCAGCAGATCCAGCAGCGTTCAAAAGCTGCAGATTAGTGCTCCCCCTCTGGTCGAAGATGATTATTTGTGAGGGAGTGAGAGAGAGAGAGAGCCTGAGGACAGAAGTTTGAAATGCTCTGATGCGTTTTGGAATGCTTTATATTCATTCATTCCTAAGTCAAATTTTGTTTTCCTACAGCAGCCTATAACAGTAACGAGTCGCAGGGACTTGGCTTGTATCAAATTTTATACGTATTTTAGATTAATTATGTGAAATTATGATGTTTTTCTTTAATTTAAAAACAAGTTTGAGCTTTATTATGCCACAGATGAAATTTTAACACATAATATGTTAAGAATTCAAAATCAACGTTCCAATTATTAGGCCGCAAACATTCGCAAAATTATGCTGTTTGCTTTTGTTTTCTGTACTTCAAATCTTTGTTGGTACGCTTAACACATGTTCGAATACTTAAAAAAATGATCTTGTTTTCCG

Network for GWHGAAEX011596

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	37	100	1.70E-10
PF00076.21	RRM_1	172	224	3.60E-08
PF07744.12	SPOC	500	609	1.30E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.540
SRP064423	SRR2545915	Juvenile tuber	38.170
SRP108465	SRR5643513	five period of Gastrodia elata	33.540
	SRR5643514	five period of Gastrodia elata	26.880
	SRR5643515	five period of Gastrodia elata	26.720
	SRR5643524	five period of Gastrodia elata	28.690
	SRR5643525	five period of Gastrodia elata	24.010
	SRR5643528	five period of Gastrodia elata	21.110
	SRR5643658	five period of Gastrodia elata	23.400
	SRR5643659	five period of Gastrodia elata	37.580
	SRR5643660	five period of Gastrodia elata	43.280
	SRR5643661	five period of Gastrodia elata	35.960
	SRR5643662	five period of Gastrodia elata	48.370
	SRR5643663	five period of Gastrodia elata	43.460
	SRR5643664	five period of Gastrodia elata	49.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	61.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	53.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.800
SRP279888	Gastro	Gastrodia elata tuber	42.69
	Juven	Juvenile tuber	38.05
	Mother_Gastro	Mother tuber of Gastrodia elata	38.10
	Mother_Juven	Mother tuber of Juvenile	27.77