Gene detail

Detail information of GWHGAAEX011602/evm.TU.scaffold_38.185

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|338733967\|ref\|YP_004672440.1\|	1.00E-27	hypothetical protein SNE_A20720 [Simkania negevensis Z]
KOG	KOG2803	1.00E-175	Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase
nr	gi\|743767070\|ref\|XP_010913784.1\|	0	PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9ZVI9\|PECT1_ARATH	3.00E-176	Ethanolamine-phosphate cytidylyltransferase
trEMBL	tr\|F6I6P3\|F6I6P3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62611.1}
TAIR	AT2G38670	1.00E-175	phosphorylethanolamine cytidylyltransferase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	5411393	5437104	-

Transcript Sequence
>GWHTAAEX011602 TTATTTTTAAAATATTTTTTATCCATTTTTAGAAAAATTAGAGGTATTTTTTACGGAGTCTCCCACTCGCACAATGCGCAAAGGAAATAGGAATGGTGGGGCCCGCAATGTAGCGGCGGGACCCATACAGACTCCGCAGTGGCCCCATGAAAACCTGGGCATAGCGTCTTGCCGTTTTCGACGGGGTCTACTGCTCTCAGGAAGAAGACCCGTTCCCTTCTCCTTATTTCAACTAATCCGCTTTGAGTTTCTTTATCCGAGAATTCCATTTATTATTGTTCCGATTTGTCTGCGCCATCGTGTTATTAAAGATTGGAATCAATTCGATTCTACTAGAATCGCTGCCTGGCGGGCGATATCTTCATTCTTCTCATTTTCTTAGTGATTGCGGATTTCAGCTCATCGGCGGACTAGAATTGCAGCAAGGGTTCAATCTGATCAAGATTTGTTTCTAATTGGATTCGGCAGTACTGATTGCCAGAGGAGGAATTGGATCGATCAAGGGAACGAGATCAATGGATTTCGAAAGTAACAGCCGGATCTGGGACGGAGTTCCGCAGTTGGTCGGGTTAGGCGGGCTTATGATTACTGCCGCGGTTCTGGGGCTCTCAAAGGGTTACTTTTTTGGAATCGGACCGCATTCCTTCTTTGATCTCTGGCCGGATTTCGGAATATTCTACAGGCGGAGAAGCAGCAAGAAGCCGGTTAGGGTTTACATGGATGGTTGCTTTGATCTCATGCACTACGGCCACGCAAATGCGTTGAGGCAGGCCAAGGCGCTGGGAGATGTCTTGGTTGTAGGAGTTATTAGCGATGAAGAGATTATTGCAAATAAAGGTCCTCCTGTTTTATCCATGGAAGAAAGGCTGATTCTTGTTAGTGGACTCAAGTGGGTGGATGAAGTTATAGCAAATGCTCCTTATGAGGTTAATGAAAAATTCATGAACACTCTTTTTACTGAATATAAAATTGATTACATCATACATGGAGATGACCCGTGTCTGCTACCTGATGGAACTGATGCTTATGAACTAGCAAAAAAGGCTGGTCGCTACAAGCAAATCAAACGCACTGAAGGGGTCTCAAGCACTAATATTGTTGATAGGATACTGCTTTCGTTAAGGTGTGCTGAAGTCGGTAGCCAGGTTATTGCACCGAACATTCCACTGCACTGCAATGATGGAAAGTCTGAGAGTGAGGTAACTGAATCCAAGAAATTTCAAGTGCCTCATTTTCTTCCAACATCACGCAGGATAATGCAGTTTTCAAATGGAAAGGGACCTGGTCCAAATGCCCGTGTAGTGTACGTGGATGGTGCATTTGATATCTTTCATGCTGGCCACGTTGAGATTTTCAAATGCGCTAGGCAGCATGGAGATTTTCTTCTTGTTGGCATTCACAGCGACCAAACTGTGAGTCAGAGGAAAGGATCAAATCCCATAATGAACCTACATGAGCGCAGCCTCAGCGTTCTTGCATGCCGGTACGTTGATGAAGTGATAATTGGCGCTCCCTCGGAAGTTACCTTCGATATGATTCGGACCTTCAATATATCTCTGGTCGTGCATGGAACAGTTTCTGACAACAGCAGCAGCAAGGATGAGATGGAGCCATATTCCATTCCCAAAAGCATGGGTATTTTCAGGACAATTACGAGCCCTAAGACGGTAACATCGTCCTCCATAGCCAGCAGAGTCATCCATAACCTTGATGCTTACAAGCAAAGAAATTCGAAGAAAAAAGAGAGCGAAGACCGGTACTACGAAGAGAAGAAGTTTGTATCTGGCGATTAATTTGACGGTTGCAGTTTATTATTATACCACAACAGCGTTAGATACGATACAATGGGACTTTCAAAAATCAGCTGCTCCTTGATTTAGGGTCTGTTATGAGTGCTCATTTAATACAGACTGAAGAGAGCTGTCCACAGTTTCTACCTTTTGACTGTCTGAAAATTTGTTTCATTAATTCTTTAATGTATTGTGATTATACAGTCTTCTGCATTTCCTACTTTGAATGCCTTGCAATAAAAATCTCTGTATATATACTACACATTGATTCTCAAAATAAGTTATAAACACAAACTAGGTAGCTGATATTATTCATGTACTTGACACTTGCTGTTTTGATTCTCCTTATAAATAAAATGCTAATGAAGAATCAGATTTG

Network for GWHGAAEX011602

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01467.25	CTP_transf_like	67	196	1.10E-22
PF01467.25	CTP_transf_like	264	359	6.80E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00967	PCYT2	Metabolic pathways	map01100
		Glycerophospholipid metabolism	map00564
		Phosphonate and phosphinate metabolism	map00440

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.510
SRP064423	SRR2545915	Juvenile tuber	39.120
SRP108465	SRR5643513	five period of Gastrodia elata	25.070
	SRR5643514	five period of Gastrodia elata	28.950
	SRR5643515	five period of Gastrodia elata	31.490
	SRR5643524	five period of Gastrodia elata	28.600
	SRR5643525	five period of Gastrodia elata	49.080
	SRR5643528	five period of Gastrodia elata	58.060
	SRR5643658	five period of Gastrodia elata	52.740
	SRR5643659	five period of Gastrodia elata	26.220
	SRR5643660	five period of Gastrodia elata	26.490
	SRR5643661	five period of Gastrodia elata	27.230
	SRR5643662	five period of Gastrodia elata	21.510
	SRR5643663	five period of Gastrodia elata	23.370
	SRR5643664	five period of Gastrodia elata	23.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	44.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.480
SRP279888	Gastro	Gastrodia elata tuber	35.65
	Juven	Juvenile tuber	23.03
	Mother_Gastro	Mother tuber of Gastrodia elata	63.62
	Mother_Juven	Mother tuber of Juvenile	50.23