Detail information of GWHGAAEX011612/evm.TU.scaffold_38.195


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|478179916|ref|YP_007700989.1|9.00E-2730S ribosomal protein S16 [Octadecabacter arcticus 238]
KOGKOG34192.00E-68Mitochondrial/chloroplast ribosomal protein S16
nrgi|658017359|ref|XP_008344025.1|5.97E-71PREDICTED: 37S ribosomal protein S16, mitochondrial-like isoform X2 [Malus domestica]
Swissprottr|Q4G391|RR16_EMIHU3.00E-1630S ribosomal protein S16, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00385}
trEMBLtr|M5VRD3|M5VRD3_PRUPE4.00E-71Uncharacterized protein {ECO:0000313|EMBL:EMJ03912.1}
TAIRAT5G569402.00E-68Ribosomal protein S16 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004156191515629061-
Transcript Sequence

Network for GWHGAAEX011612

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00886.18Ribosomal_S169703.00E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02959RP-S16, MRPS16, rpsP Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.400
SRR2545915Juvenile tuber52.890
SRP108465SRR5643513five period of Gastrodia elata87.310
SRR5643514five period of Gastrodia elata106.900
SRR5643515five period of Gastrodia elata94.750
SRR5643524five period of Gastrodia elata96.030
SRR5643525five period of Gastrodia elata105.220
SRR5643528five period of Gastrodia elata99.120
SRR5643658five period of Gastrodia elata97.450
SRR5643659five period of Gastrodia elata95.390
SRR5643660five period of Gastrodia elata107.970
SRR5643661five period of Gastrodia elata100.980
SRR5643662five period of Gastrodia elata84.710
SRR5643663five period of Gastrodia elata98.320
SRR5643664five period of Gastrodia elata88.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_165.050
SRR6049655Rhizomagastrodiae_C368-T10_good_179.610
SRR6049656Rhizomagastrodiae_C368-T07_good_172.100
SRR6049657Rhizomagastrodiae_C368-T07_good_162.610
SRR6049658Rhizomagastrodiae_C368-T04_good_141.500
SRR6049659Rhizomagastrodiae_C368-T04_good_142.940
SRR6049660Rhizomagastrodiae_C368-T01_good_152.810
SRR6049661Rhizomagastrodiae_C368-T04_good_151.610
SRR6049662Rhizomagastrodiae_C368-T01_good_169.190
SRR6049663Rhizomagastrodiae_C368-T01_good_154.460
SRR6049664Rhizomagastrodiae_C368-T10_good_188.950
SRR6049665Rhizomagastrodiae_C368-T10_good_188.950
SRP279888GastroGastrodia elata tuber 65.05
JuvenJuvenile tuber136.01
Mother_GastroMother tuber of Gastrodia elata 51.68
Mother_JuvenMother tuber of Juvenile 71.71