Gene detail

Detail information of GWHGAAEX011618/evm.TU.scaffold_38.201

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1474	6.00E-60	Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins
nr	gi\|672119147\|ref\|XP_008782805.1\|	2.66E-179	PREDICTED: transcription factor GTE7-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9S7T1\|GTE3_ARATH	2.00E-60	Transcription factor GTE3, chloroplastic (Precursor)
trEMBL	tr\|M0SAL6\|M0SAL6_MUSAM	4.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P00480_001}
TAIR	AT1G73150	6.00E-60	global transcription factor group E3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	5743696	5747380	-

Transcript Sequence
>GWHTAAEX011618 ACGCGGCCCAAATTCACGCGAAATCCAAACGAAACGCTAAATTAACACCTGCGAGCTTTTGCCACAGGTAAAATTACAAAGAGCCACAGAGATAAGGTATGGGCCCTGATGAACGCCACGTGTGGAAAAAAGCATCATCGAAGCCGTCCGTGACAGCTTGGACGGGCAGAGTTTTCGGGTACCGTAGACAGACATTAGCCGTTAGATTCTACATCCGGTTTTGATAGACGGTCAATAAGCTGCCCGTGAAGTGGCGGGTCAGATCTTGCGGCCTTTAAGAAGCGACGCAGCTTCGGCCCTTTTACTCCACGCCAAATGCGAGGGTTTGGTTTCTAAGGGGAAGCCCTCGCTTTCTTCGATTTTTTCCGATCGAATTATTGCCGGCGGCACAATCGTCGGCATCTGAAGCGGAAGTTCAATACATCTGAAGAAGGAAAAGCTAATAGTGGGTCGGGTTTCTATGAGAATTCGGCTGCTCTCGGCGTCTAAGATCGCCGGAGCAGGCCCGATCTGAGAAGCAGCTGCCTTTTTGCATGGCTTCCGCTCTCCTGGATAGCCGGAATGAGCCTTACTGGGGAGAGCGGAAGGCTTATATGAAGAAAATCCCTAATTATATTCCTAACCCAAGGCTTGGCCTCAACTCGAACCCAAACCCTAACCCTAACAGCATCCCGCACACTAGCACCCGAGGCATCGGCAGCTATGAAGCTAATCAAGGGTGCCAGAAAGAAGATCCGTTGGCTGGAGACGGACCAGCTTTATCGGTAGATTCTTCCTCATTCAGCTATAAACCGATTGGTGTTGATCAAACCCGGGACTTTGAATTTGCTGGCGCTTCGCTCGGCTATTTCAACTTCAGCATCTCGAGTTTATCCAAGAAAGAGCTGCGGGATTTGAAAAGGAGGCTAATTTCCGAGCTGGAGCAAGTTCGATGTGTCACAAGCAGGATTGAATCACGAGAGATCCAGTCCTCGGCTAGATCTGTGGGGTATTCCACCTCTGGGATCTATTGCAGCAGCCGTGAGTTTAACTCCCCTTCAGCCCTTCAGAACCACCACCTTGCCCAACCTGAGTTTTATGATGAAAAGGAAATAAAGGCTTCAGAACCCAAAATGGAGCACCTTTTGCCGCTCCAAAACCCGGATCTTTTAGGACAAGCCACATCTCCCTCTCCTAGAGCTGCACTTGATTCAAAAAATCTTCTTTTGGGCATGATGAAGAAGTGCTCCCAGATCTTGTGCCGGCTGATGAAGCATAAGGGAGGTCTCTGGTTCAATTCCCCGGTAGATGTTCAGGGGATGGGTTTGCATGACTACAGGTTGATCATCAAGTATCCGATGGATCTTGGAACCGTGAAGTTCAGGCTAAAAAATGGTTTTTACAAGACGCCATTAGATTTTGCTGAGGATATTAGGCTTACTTTTAACAATGCCCTCATTTACAATCCAGAAACTCATGAAGTGCATAAACTGGCAGCATTGTTCCTCCGGCAGTTTGAAAGCCTTTTTGGTCCGGCATATGCCAAGTATGAGAAGCAGGTGGCTGCAATTGCCAGGCAAAAGGACGAGAAGGCCATGTGCTCTTCTTGGCCTCATCAGGTTTCTGAGAATCCAATCAGAGCAGATATTAAACCCTCACTGCCTTCCCCACCTCCAGCTCCAGTTCCTCAGCATAGAACCTATTCCAAGCCATCGGAACTCCCTTGCCTTCCACAACCACCTCCTCATCATTCTGTTAGGGGGAAGCTACCAAAGCCCAAGGCCAAAGAGCCGAACAAGAGACCCATGAGCTATGAAGAGAGACAGAAGCTAAGCTTTGGGCTTCAGAGCCTTCCCGAGGAGAAGATGAATCAGGTTCTTCAGATTGTTAAAAAGAGGAATGTGGAGACCCAACAAGATGGCGATGAGATTGTTCTAGACTTTGAGACTATGGATGCGGAGACGCTCTGGGAGCTTGATCGATTCTTGTGCAATTGTAAGAAGATGCTGAGCAAGATCAAGAGGCGGGAGGCGTTGCTTGCAGAAAACAACACAGCTTCTTCAATCCCTGCCCCATCAGCTGCCATTACAGGATCACTTGCAAAGTCCCCGATTGTCGATGATGCTGCAGAAGCAATGGTGCCGAAGAGGGGGAAGAAAACAGAACCCGTGGATGAGGATATTGACATTGGTGAAGAGATGACATCTATGAATTACCCTTCTGTTGAGATTGAGAAGGATGATGGCCGTGCCAGTAGCTCCAGCAGCTCAGGCAGTGATTCATCTTCATCTTCTTCTACTGATTCTGAATCAGGGAGCTCCTCTGGAAGCGGTTCTGATAATGATGAAGATGAAGATGATGCCTGCTCTCCGGTCGGGCAATCAGGAGCCTCACCACGGAACTAACATAGGTAGGCAATGCGTGGTTTTAGGATCTAGGATTATTAATACAGTGAGTTTGGGTGACTCGGAGGATTTGGTAGACAAATTATATATGTAAAAAGAAAGCAAGTCAAGAAAAAGAAGAAAATGTTAGGTGTAGTTTGGGATTATGTTAAAAGGAATTTTCTACTTGAATTGCACTCTTCTTCTTTTCCTGTTCAGTGTAGCTTTTTAAAATATTGGCTTGATTGATTGAAGTAAGCATCACTGCAGATGCTGTTTGGTAAGCTTTTGGTTGGCTGCTTTTTATTTATCTCATGCCATATATTTTCTTTTACACATTCTTTATGTTCTGTTGGTGTCTGCATTTTTTGGTGTATATAAAAGTTGGTTGCCTTGTTAGATGAGAAATGTGAGAATTAAATTATTTTAATTCTTGACATGTCAAAAGCACAAATCTCACTGATCATATAATTATTTTTTTATGCTATATTTATAAAAAATTTATTGGTGTTTTAAATTTTAGATAGAGCATATAATATAATAAGCATAAAGAAATTGTATGATTTGAGAAGCACTTTTTAATCATTTCAATAATTTCCTTCTCTATATATATAGTGCCGACCATATTTGGAAAGTCTTAAGCAATCAAGAGAAAAATCAAAAGTAATTCACAATCAGTAGTGGGGAATGCTATTTGGCCACAAGCTTGGATAATTATATGGAGGTCAAACAAGGGGTTCGTACTTTGTACTTTGTGGCCAAAACAAGGTTGATGATTGATGGGAAAAAGGCAAGCAATCAATGCTTTCATTGCATTCTCAATCAAATACTTGCATTGAGATAATGTGGTGATTGACTTTTCAAAATCTTTGGCATGGCCCATAACATAAGTCTGCTATTGTAAAATTTTGTAGAGATGATGTTTGTGATAGAAAGTGCAGAGGTTGGATAACTGAGTCTTTCTTGCGCAACTACTAATAATGCATGTTTATGTTTCCAAATTAGAGGAGATTGATGTGAAATTATTTGAATGCTTTGCTGTGCATGACGTCAATGGTGGATAGCGGTATGATGTTGATAGTTGGTAGGTCAACTAAAGATTAGCAACTTAATGTCTTGCTTTTATATAGTTAATGTTTAATAAATGCTTGATGCTTG

Network for GWHGAAEX011618

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00439.24	Bromodomain	231	315	4.40E-18
PF17035.4	BET	417	479	1.00E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	61.270
SRP064423	SRR2545915	Juvenile tuber	67.670
SRP108465	SRR5643513	five period of Gastrodia elata	96.790
	SRR5643514	five period of Gastrodia elata	74.130
	SRR5643515	five period of Gastrodia elata	90.970
	SRR5643524	five period of Gastrodia elata	76.400
	SRR5643525	five period of Gastrodia elata	95.270
	SRR5643528	five period of Gastrodia elata	73.480
	SRR5643658	five period of Gastrodia elata	88.790
	SRR5643659	five period of Gastrodia elata	68.380
	SRR5643660	five period of Gastrodia elata	79.220
	SRR5643661	five period of Gastrodia elata	89.870
	SRR5643662	five period of Gastrodia elata	118.800
	SRR5643663	five period of Gastrodia elata	100.710
	SRR5643664	five period of Gastrodia elata	91.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	64.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	75.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	70.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	71.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	88.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	75.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	67.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	99.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	74.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	74.610
SRP279888	Gastro	Gastrodia elata tuber	85.82
	Juven	Juvenile tuber	64.94
	Mother_Gastro	Mother tuber of Gastrodia elata	126.32
	Mother_Juven	Mother tuber of Juvenile	92.01