Detail information of GWHGAAEX011623/evm.TU.scaffold_38.207
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-121 | FOG: PPR repeat |
| nr | gi|743837398|ref|XP_010936388.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Elaeis guineensis] |
| Swissprot | tr|Q9STE1|PP333_ARATH | 2.00E-121 | Pentatricopeptide repeat-containing protein At4g21300 |
| trEMBL | tr|C5WWH1|C5WWH1_SORBI | 0 | Putative uncharacterized protein Sb01g032140 {ECO:0000313|EMBL:EER92105.1} |
| TAIR | AT4G21300 | 8.00E-121 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 5850139 | 5852541 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011623
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 104 | 129 | 0.24 |
| PF01535.19 | PPR | 309 | 333 | 3.20E-05 |
| PF01535.19 | PPR | 381 | 404 | 0.52 |
| PF13041.5 | PPR_2 | 408 | 454 | 4.10E-11 |
| PF01535.19 | PPR | 482 | 508 | 0.21 |
| PF01535.19 | PPR | 511 | 538 | 0.00034 |
| PF01535.19 | PPR | 582 | 604 | 0.0037 |
| PF13041.5 | PPR_2 | 612 | 657 | 1.90E-11 |
| PF01535.19 | PPR | 684 | 706 | 0.12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.120 |
| SRR2545915 | Juvenile tuber | 20.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.840 |
| SRR5643514 | five period of Gastrodia elata | 15.630 | |
| SRR5643515 | five period of Gastrodia elata | 13.560 | |
| SRR5643524 | five period of Gastrodia elata | 14.630 | |
| SRR5643525 | five period of Gastrodia elata | 14.280 | |
| SRR5643528 | five period of Gastrodia elata | 12.300 | |
| SRR5643658 | five period of Gastrodia elata | 16.370 | |
| SRR5643659 | five period of Gastrodia elata | 11.180 | |
| SRR5643660 | five period of Gastrodia elata | 12.520 | |
| SRR5643661 | five period of Gastrodia elata | 9.530 | |
| SRR5643662 | five period of Gastrodia elata | 10.090 | |
| SRR5643663 | five period of Gastrodia elata | 12.590 | |
| SRR5643664 | five period of Gastrodia elata | 11.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.47 |
| Juven | Juvenile tuber | 19.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.09 | |
| Mother_Juven | Mother tuber of Juvenile | 16.43 |