Detail information of GWHGAAEX011626/evm.TU.scaffold_38.210


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|328951195|ref|YP_004368530.1|1.00E-57uroporphyrinogen-III synthase [Marinithermus hydrothermalis DSM 14884]
nrgi|719969573|ref|XP_010268820.1|5.03E-129PREDICTED: uroporphyrinogen-III synthase, chloroplastic [Nelumbo nucifera]
Swissprottr|Q10QR9|HEM4_ORYSJ2.00E-115Uroporphyrinogen-III synthase, chloroplastic (Precursor)
trEMBLtr|E0CPB0|E0CPB0_VITVI3.00E-127Putative uncharacterized protein {ECO:0000313|EMBL:CBI19567.3}
TAIRAT2G265407.00E-49uroporphyrinogen-III synthase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004159014845927623+
Transcript Sequence

Network for GWHGAAEX011626

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02602.14HEM4702943.00E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01719hemD, UROS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0033014Biological Processtetrapyrrole biosynthetic process
GO:0004852Molecular Functionuroporphyrinogen-III synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.150
SRR2545915Juvenile tuber17.270
SRP108465SRR5643513five period of Gastrodia elata12.900
SRR5643514five period of Gastrodia elata12.670
SRR5643515five period of Gastrodia elata11.480
SRR5643524five period of Gastrodia elata11.690
SRR5643525five period of Gastrodia elata10.720
SRR5643528five period of Gastrodia elata15.000
SRR5643658five period of Gastrodia elata17.550
SRR5643659five period of Gastrodia elata14.360
SRR5643660five period of Gastrodia elata10.850
SRR5643661five period of Gastrodia elata13.250
SRR5643662five period of Gastrodia elata14.520
SRR5643663five period of Gastrodia elata14.000
SRR5643664five period of Gastrodia elata10.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.760
SRR6049655Rhizomagastrodiae_C368-T10_good_16.100
SRR6049656Rhizomagastrodiae_C368-T07_good_16.430
SRR6049657Rhizomagastrodiae_C368-T07_good_17.920
SRR6049658Rhizomagastrodiae_C368-T04_good_16.610
SRR6049659Rhizomagastrodiae_C368-T04_good_13.830
SRR6049660Rhizomagastrodiae_C368-T01_good_15.500
SRR6049661Rhizomagastrodiae_C368-T04_good_15.450
SRR6049662Rhizomagastrodiae_C368-T01_good_15.070
SRR6049663Rhizomagastrodiae_C368-T01_good_14.950
SRR6049664Rhizomagastrodiae_C368-T10_good_17.740
SRR6049665Rhizomagastrodiae_C368-T10_good_17.740
SRP279888GastroGastrodia elata tuber 12.68
JuvenJuvenile tuber12.69
Mother_GastroMother tuber of Gastrodia elata 7.00
Mother_JuvenMother tuber of Juvenile 11.55